gchure / reproducible_researchLinks
A template repository for how I structure my scientific research
☆100Updated last year
Alternatives and similar repositories for reproducible_research
Users that are interested in reproducible_research are comparing it to the libraries listed below
Sorting:
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆101Updated 3 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆100Updated 3 months ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆162Updated last year
- Simulate microbial community batch culture experiments.☆42Updated last year
- MS Word templates for a more readable BioRxiv product☆24Updated 7 years ago
- bedford lab research☆68Updated this week
- Clone me to create your Manubot manuscript☆469Updated 10 months ago
- 🧫 Read Flow Cytometry Standard (FCS) files in Julia☆17Updated 2 years ago
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆118Updated last year
- Fraser Lab website☆38Updated this week
- Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecolog…☆74Updated 7 years ago
- 📝 A nicely formatted LaTeX preprint template☆573Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- GPU-accelerated multicellular modelling framework☆66Updated 6 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆114Updated this week
- Data Analysis with Bootstrapped ESTimation☆364Updated last week
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆20Updated last year
- A short tutorial on getting started with Snakemake for workflow management☆55Updated 6 years ago
- PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.☆524Updated last week
- Tips on figure making, plus help with Inkscape and Matplotlib.☆44Updated 2 years ago
- Muon for Julia☆27Updated last week
- Funding schemes and travel grant opportunities for postdocs☆54Updated 6 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆28Updated this week
- ☆128Updated 2 years ago
- A template for standard compliant snakemake-workflows☆116Updated 3 months ago
- 3rd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School☆14Updated 2 years ago
- python Circos☆368Updated last year