gchure / reproducible_researchLinks
A template repository for how I structure my scientific research
☆97Updated last year
Alternatives and similar repositories for reproducible_research
Users that are interested in reproducible_research are comparing it to the libraries listed below
Sorting:
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆92Updated last year
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆100Updated 2 years ago
- GPU-accelerated multicellular modelling framework☆63Updated 2 months ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- Fraser Lab website☆37Updated last week
- Simulate microbial community batch culture experiments.☆42Updated 8 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Python Environment for Modeling and Simulating Biological Systems☆119Updated last week
- A simple Snakemake profile for Slurm without --cluster-config☆160Updated last year
- MS Word templates for a more readable BioRxiv product☆24Updated 6 years ago
- Clone me to create your Manubot manuscript☆465Updated 6 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated last week
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆117Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆112Updated last week
- Utilities for formatting matplotlib figures☆31Updated 4 months ago
- ☆128Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- Python framework for Systems Biology modeling☆182Updated 4 months ago
- Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecolog…☆72Updated 6 years ago
- Data Analysis with Bootstrapped ESTimation☆357Updated 3 months ago
- bedford lab research☆67Updated last week
- 📝 A nicely formatted LaTeX preprint template☆569Updated 2 years ago
- 📓 A full-featured electronic lab notebook theme (with plugins!) for Jekyll☆64Updated 4 years ago
- python Circos☆358Updated last year
- Funding schemes and travel grant opportunities for postdocs☆52Updated 6 years ago
- course material☆130Updated 2 years ago
- A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/☆73Updated 6 years ago
- Pyro models of SARS-CoV-2 variants☆78Updated 11 months ago
- Examples of great academic lab expectations, manuals, policies for joining and being in the lab☆51Updated 5 years ago
- Web scraping to get articles for a given query. It returns an spreadsheet with titles, abstracts, doi and references of the article☆119Updated 4 years ago