gchure / reproducible_researchLinks
A template repository for how I structure my scientific research
☆101Updated last year
Alternatives and similar repositories for reproducible_research
Users that are interested in reproducible_research are comparing it to the libraries listed below
Sorting:
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆101Updated 3 years ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆103Updated 3 months ago
- Fraser Lab website☆38Updated last week
- A simple Snakemake profile for Slurm without --cluster-config☆165Updated last year
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆118Updated last year
- bedford lab research☆68Updated last week
- Simulate microbial community batch culture experiments.☆42Updated last year
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecolog…☆74Updated 7 years ago
- ☆128Updated 2 years ago
- A template website for presenting your reproducible website☆15Updated 2 years ago
- Clone me to create your Manubot manuscript☆469Updated 11 months ago
- LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.☆19Updated last year
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆28Updated this week
- A template for standard compliant snakemake-workflows☆115Updated 3 weeks ago
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- The uncompromising Snakemake code formatter☆180Updated 3 weeks ago
- A short tutorial on getting started with Snakemake for workflow management☆57Updated 6 years ago
- Funding schemes and travel grant opportunities for postdocs☆55Updated 6 years ago
- A small python library to adjust and annotate axis ticklabels in plots.☆52Updated 3 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Course website "Docker and Singularity for reproducible research: getting started with containers"☆33Updated last month
- Cookiecutter for snakemake slurm profile☆133Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆115Updated this week
- MS Word templates for a more readable BioRxiv product☆24Updated 7 years ago
- A repository to practice contributing to a Manubot manuscript☆47Updated 5 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- 📝 A nicely formatted LaTeX preprint template☆575Updated 2 years ago
- Python framework for Systems Biology modeling☆188Updated 4 months ago