Alternatives and similar repositories for VESPA

Users that are interested in VESPA are comparing it to the libraries listed below

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆118Updated 6 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆73Updated 2 weeks ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆68Updated 3 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆50Updated 11 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆90Updated last year
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆75Updated 7 months ago
• aqlaboratory / rgn2
  ☆108Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 3 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆82Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆85Updated 3 weeks ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆80Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• Exscientia / abodybuilder3
  ☆68Updated 11 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆64Updated last year
• jishnu-lab / SWING
  ☆25Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆53Updated last month
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆137Updated last month
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆106Updated last month
• AbSciBio / igdesign
  ☆46Updated 8 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆52Updated last month
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 3 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆66Updated 10 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆63Updated 2 weeks ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 6 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆113Updated 6 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆155Updated 7 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆112Updated last year
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆47Updated last year
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆116Updated 3 months ago
• dahjan / DMS_opt
  ☆72Updated 5 years ago