VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.
☆36Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for VESPA
Users that are interested in VESPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆11Jun 2, 2022Updated 3 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆167Aug 24, 2023Updated 2 years ago
- ☆23Jun 10, 2025Updated 11 months ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 3 months ago
- ☆21Dec 3, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 3 months ago
- MULAN: Multimodal Protein Language Model for Sequence and Structure Encoding☆25May 22, 2025Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,307May 22, 2025Updated last year
- ☆12May 3, 2025Updated last year
- Directed evolution of proteins in sequence space with gradients☆96Oct 18, 2025Updated 7 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Jun 27, 2025Updated 10 months ago
- A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn☆13Nov 28, 2025Updated 5 months ago
- The first 100B protein language model from biomap☆25Mar 17, 2025Updated last year
- My work on building a deep neural network for fast and accurate protein protein interaction prediction☆11Mar 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆30Aug 27, 2025Updated 8 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆200Mar 16, 2024Updated 2 years ago
- ☆24Dec 2, 2024Updated last year
- ML-guided enzyme engineering☆83Apr 13, 2026Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 8 months ago
- ☆40Sep 17, 2024Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆39Apr 17, 2026Updated last month
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 9 months ago
- Alignment-free structure prediction using protein language models☆22Nov 2, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆319Jun 13, 2025Updated 11 months ago
- PDB ProtVista Viewer☆11Jul 8, 2025Updated 10 months ago
- Energy-guided binder design pipeline built on BindCraft☆18Jun 6, 2025Updated 11 months ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆13Sep 26, 2017Updated 8 years ago
- A compilation of deep learning methods for protein design☆96Nov 5, 2022Updated 3 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Dec 10, 2025Updated 5 months ago
- ☆14Jul 14, 2023Updated 2 years ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆115Nov 18, 2025Updated 6 months ago
- ☆13Sep 25, 2022Updated 3 years ago
- ☆78Oct 27, 2021Updated 4 years ago
- Making Protein Language Modeling Accessible to All Biologists☆164May 15, 2026Updated last week
- PLMFit platform for TL on PLMs☆21Aug 13, 2025Updated 9 months ago