Alternatives and similar repositories for modelforge

Users that are interested in modelforge are comparing it to the libraries listed below

• yehlincho / BoltzDesign1
  ☆209Updated last month
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆103Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆193Updated last month
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆120Updated 3 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆146Updated 3 weeks ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆161Updated 6 months ago
• ikalvet / heme_binder_diffusion
  ☆140Updated 2 months ago
• levinthal / Pallatom
  ☆117Updated 4 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆101Updated 2 weeks ago
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆287Updated last week
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆99Updated 6 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆113Updated 4 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆79Updated 2 months ago
• jproney / AF2Rank
  ☆112Updated 2 years ago
• SantiagoMille / germinal
  Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
  ☆120Updated this week
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆68Updated this week
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆145Updated last year
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆135Updated 10 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆162Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 3 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆135Updated 2 weeks ago
• ELELAB / RosettaDDGPrediction
  ☆76Updated 7 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆85Updated 3 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆94Updated 10 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆101Updated 2 weeks ago
• Kuhlman-Lab / evopro
  ☆87Updated 2 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆108Updated 6 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• escalante-bio / mosaic
  composite-objective protein design
  ☆99Updated last week
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆71Updated last month