PacificBiosciences / primrose
☆45Updated this week
Related projects: ⓘ
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated this week
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆51Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- Set of tools to manipulate and visualize modified base bam files☆47Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆31Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆41Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆47Updated last year
- ☆77Updated 4 years ago
- ☆41Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated last week
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆58Updated 3 years ago
- ☆29Updated 3 weeks ago
- ☆27Updated 2 weeks ago
- Improved Phased Assembler☆27Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Error correction of ONT transcript reads☆57Updated last year
- TGS scaffolding☆45Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆40Updated 3 weeks ago
- ☆29Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆34Updated this week
- ☆56Updated 2 months ago