Multi-task benchmarking of single-cell multimodal omics integration methods
☆27Jun 8, 2026Updated 2 months ago
Alternatives and similar repositories for scMultiBench
Users that are interested in scMultiBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jul 25, 2026Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated last year
- ☆72Sep 16, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Apr 3, 2023Updated 3 years ago
- COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This …☆15Nov 12, 2024Updated last year
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- ☆16Nov 1, 2025Updated 10 months ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- A set of processes/pipelines for bioinformatics☆15Updated this week
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆30Jul 1, 2024Updated 2 years ago
- A foundation model for single-cell epigenomic data☆71Jun 3, 2026Updated 2 months ago
- ☆14Mar 28, 2025Updated last year
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- ☆14Apr 27, 2022Updated 4 years ago
- ☆41Dec 29, 2022Updated 3 years ago
- ☆13Jul 18, 2025Updated last year
- Simultaneous Time Series Forecasting on the global COVID-19 Daily Vaccinations☆12Jun 9, 2021Updated 5 years ago
- ☆12Apr 25, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- ☆14Jul 16, 2024Updated 2 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 4 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆17Mar 24, 2026Updated 5 months ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 10 months ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 8 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cell identification in high-resolution Spatial Transcriptomics☆16Dec 3, 2025Updated 8 months ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆26Jun 23, 2026Updated 2 months ago
- .h5mu files interface for Seurat☆35Nov 28, 2023Updated 2 years ago
- ☆15Jan 14, 2025Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago