OrensteinLab / DeCoDeLinks
Degenerate Codon Design
☆13Updated 5 years ago
Alternatives and similar repositories for DeCoDe
Users that are interested in DeCoDe are comparing it to the libraries listed below
Sorting:
- Webserver and command line tool for annotating engineered plasmids☆136Updated 6 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆177Updated last year
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆265Updated last month
- WebLogo 3: Sequence Logos redrawn☆154Updated last month
- snakemake pipeline for creating trees from sequence sets☆97Updated this week
- Software for the visualization of sequence-function relationships☆207Updated 3 weeks ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- nucleic acid folding☆109Updated 5 months ago
- Protein 3D structure prediction pipeline☆95Updated last week
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆214Updated this week
- Models, design algorithms, and other software related to Salis lab publications☆36Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆122Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆79Updated 2 months ago
- Tool for deep mutational scanning experiments.☆57Updated 10 months ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆32Updated 3 years ago
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆54Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 2 weeks ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Updated 7 months ago
- Logan Unitigs and Contigs☆184Updated 4 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated last week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆217Updated 3 weeks ago
- HMMER: biological sequence analysis using profile HMMs☆393Updated 4 months ago
- Protein structure comparison tools such as SSAP and SNAP☆67Updated 2 years ago
- ☆86Updated 2 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆45Updated 5 years ago
- Centroid RNA package☆19Updated 5 years ago
- Genomic Pre-trained Network☆319Updated last week
- antiSMASH☆240Updated 2 months ago