Alternatives and similar repositories for DeCoDe:

Users that are interested in DeCoDe are comparing it to the libraries listed below

• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆115Updated 2 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated this week
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆71Updated 3 weeks ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆68Updated this week
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆48Updated 3 weeks ago
• ntranoslab / esm-variants
  ☆71Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated last week
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆28Updated 3 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆69Updated 2 weeks ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆30Updated 9 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆20Updated 2 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆106Updated 2 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆87Updated 6 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆30Updated 2 months ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆10Updated 3 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆70Updated 3 weeks ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆39Updated 5 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 4 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆153Updated this week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 10 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆54Updated 11 months ago
• ebi-jdispatcher / webservice-clients
  A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
  ☆51Updated 6 months ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆17Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆45Updated 6 months ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆54Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆69Updated 10 months ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆25Updated 2 months ago