Alternatives and similar repositories for phenomics-assistant

Users that are interested in phenomics-assistant are comparing it to the libraries listed below

• monarch-initiative / oai-monarch-plugin
  First pass at a thin wrapper around the Monarch API and ChatGPT plugin
  ☆12Updated 2 months ago
• monarch-initiative / monarch-ingest
  Data ingest application for Monarch Initiative knowledge graph using Koza
  ☆17Updated last week
• monarch-initiative / monochrom
  Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
  ☆13Updated this week
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• Knowledge-Graph-Hub / neat-ml
  Network Embedding All the Things
  ☆18Updated 2 years ago
• obophenotype / bio-attribute-ontology
  source files for OBA (Ontology of Biological Attributes)
  ☆27Updated last week
• monarch-initiative / monarch-app
  Monarch Initiative website and API
  ☆24Updated this week
• INCATools / ubergraph
  Integrated OBO ontology store
  ☆46Updated 3 weeks ago
• monarch-initiative / phenol
  phenol: Phenotype ontology library
  ☆23Updated last month
• monarch-initiative / koza
  Data transformation framework for LinkML data models
  ☆53Updated 3 months ago
• cancerDHC / ccdhmodel
  CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
  ☆16Updated 3 years ago
• OBOFoundry / OBO-Dashboard
  Summary Dashboard for Open Biological and Biomedical Ontologies
  ☆21Updated 5 months ago
• INCATools / boomer
  Bayesian OWL ontology merging
  ☆29Updated this week
• EBISPOT / ols4
  Version 4 of the EMBL-EBI Ontology Lookup Service (OLS)
  ☆63Updated this week
• obophenotype / ncbitaxon
  Build for NCBITaxon
  ☆27Updated 2 months ago
• monarch-initiative / monarchr
  R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.
  ☆14Updated this week
• NCI-Thesaurus / thesaurus-obo-edition
  OBO Library edition of NCIt
  ☆23Updated 2 months ago
• monarch-initiative / MAxO
  Medical action ontology
  ☆56Updated this week
• pato-ontology / pato
  PATO - the Phenotype And Trait Ontology
  ☆59Updated this week
• monarch-initiative / aurelian
  A motley crew of agents developed by the Monarch Initiative
  ☆14Updated this week
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆42Updated 2 weeks ago
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated last week
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last week
• INCATools / kgcl-rdflib
  Tools for working with KGCL
  ☆18Updated 6 months ago
• INCATools / dosdp-tools
  Utility for working with DOSDP design patterns and OWL ontologies
  ☆27Updated 10 months ago
• INCATools / semantic-sql
  SQL and SQLite builds of OWL ontologies
  ☆45Updated last month
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 4 months ago
• mapping-commons / sssom-py
  Python toolkit for SSSOM mapping format
  ☆54Updated last week
• microbiomedata / nmdc-schema
  National Microbiome Data Collaborative (NMDC) unified data model
  ☆33Updated this week
• monarch-initiative / HpoTextMining
  Perform text mining for identification of HPO terms in free text from scientific publication.
  ☆12Updated 11 months ago