LLM retrieval augmented generation agent for the Monarch Knowledge graph.
☆28Sep 17, 2025Updated 11 months ago
Alternatives and similar repositories for phenomics-assistant
Users that are interested in phenomics-assistant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆18Feb 24, 2026Updated 5 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- ☆16Aug 1, 2026Updated 2 weeks ago
- A registry of Knowledge Graphs, their data sources, and the ways they fit together.☆27Updated this week
- Common value sets (enums) for science, biomedicine, computing, and other areas☆15Aug 1, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Data transformation framework for LinkML data models☆69Updated this week
- Disease Mechanisms KB☆53Updated this week
- A simple Python wrapper for multiple deep research tools including OpenAI Deep Research, FutureHouse Falcon, and Perplexity AI.☆18Updated this week
- AI co-scientist☆46Updated this week
- SQL and SQLite builds of OWL ontologies☆69Aug 12, 2026Updated last week
- Summary Dashboard for Open Biological and Biomedical Ontologies☆24Jun 8, 2026Updated 2 months ago
- Data ingest application for Monarch Initiative knowledge graph using Koza☆24Jul 28, 2026Updated 3 weeks ago
- Mapping between LinkML schemas☆45Updated this week
- Monarch agent tutorial☆15Apr 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A copier template for your next LinkML project☆25Aug 1, 2026Updated 2 weeks ago
- The previous version of the Monarch Initiative website☆17Jan 26, 2024Updated 2 years ago
- A framework for empirical evaluation of phenotype matching and prioritisation☆20Updated this week
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆34Mar 19, 2024Updated 2 years ago
- Bridge2AI Standards Registry data models, API specification, and other documentation.☆16Updated this week
- Simple rust implementation of semantic similarity☆16Feb 20, 2026Updated 5 months ago
- LLM-driven curation assist tool☆118Oct 20, 2025Updated 9 months ago
- Repository for representing genotypes and their association with phenotypes☆20Feb 2, 2026Updated 6 months ago
- Network Embedding All the Things☆19Oct 4, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Web-component for creating & showing VSM-sentences — Visual Syntax Method☆31Apr 9, 2021Updated 5 years ago
- Datamodel for KGCL (Knowledge Graph Change Language)☆23Feb 11, 2026Updated 6 months ago
- Demonstration of AI review of existing functional annotations☆24Updated this week
- Materialize OWL existential relations☆23Mar 13, 2026Updated 5 months ago
- wrapper for multiple linkml storage engines☆26Apr 28, 2026Updated 3 months ago
- A motley crew of agents developed by the Monarch Initiative☆26Nov 17, 2025Updated 9 months ago
- Monarch Initiative website and API☆38Updated this week
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆84Aug 3, 2023Updated 3 years ago
- Tools for working with KGCL☆20Nov 19, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian OWL ontology merging☆37Jun 4, 2025Updated last year
- Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance…☆20Feb 14, 2024Updated 2 years ago
- Semantic prefix map registry☆14Jul 2, 2026Updated last month
- A python library for calculating semantic similarity between patients in N3C☆14Oct 5, 2022Updated 3 years ago
- Customizable translation of OBO graphs to dot for visualization using graphviz and other tools☆26Feb 21, 2025Updated last year
- A knowledge extraction tool that uses a large language model to extract semantic information from text☆30Jan 3, 2023Updated 3 years ago
- Ontology for representing scientific evidence and provenance information☆52Oct 2, 2025Updated 10 months ago