monarch-initiative / phenomics-assistantLinks
LLM retrieval augmented generation agent for the Monarch Knowledge graph.
☆24Updated last month
Alternatives and similar repositories for phenomics-assistant
Users that are interested in phenomics-assistant are comparing it to the libraries listed below
Sorting:
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Updated 4 months ago
- Data ingest application for Monarch Initiative knowledge graph using Koza☆19Updated this week
- Medical action ontology☆60Updated last month
- source files for OBA (Ontology of Biological Attributes)☆27Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated this week
- LLM-driven curation assist tool☆91Updated 2 weeks ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆56Updated 2 weeks ago
- Ontology Access Kit: A python library and command line application for working with ontologies☆146Updated 2 months ago
- Integrated OBO ontology store☆47Updated 3 weeks ago
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆15Updated 2 months ago
- Repository for the GA4GH phenopacket schema☆88Updated 10 months ago
- Build for NCBITaxon☆29Updated 2 weeks ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)☆43Updated last month
- phenol: Phenotype ontology library☆23Updated 3 months ago
- A motley crew of agents developed by the Monarch Initiative☆18Updated last week
- An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology☆142Updated last week
- The EMBL-EBI Ontology Lookup Service (OLS)☆67Updated this week
- OBO Library edition of NCIt☆24Updated last week
- CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)☆16Updated 3 years ago
- Network Embedding All the Things☆18Updated 2 years ago
- Monarch Initiative website and API☆28Updated this week
- Data transformation framework for LinkML data models☆54Updated this week
- Bayesian OWL ontology merging☆32Updated 2 months ago
- Summary Dashboard for Open Biological and Biomedical Ontologies☆22Updated last month
- PATO - the Phenotype And Trait Ontology☆59Updated this week
- A collection of useful python functions for looking up information and working with the Biolink Model☆24Updated last month
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species☆13Updated 2 months ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆23Updated this week
- National Microbiome Data Collaborative (NMDC) unified data model☆43Updated this week