phenopackets / phenopacket-tools
An app and library for building, conversion, and validation of GA4GH Phenopackets.
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for phenopacket-tools
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆19Updated this week
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆50Updated this week
- Repository for the GA4GH phenopacket schema☆78Updated last month
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated 7 months ago
- Python Phenopacket Tools☆11Updated this week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆76Updated last week
- phenol: Phenotype ontology library☆23Updated 3 months ago
- Github repo for the Experimental Factor Ontology (EFO)☆56Updated this week
- loinc2hpo Annotation Data☆24Updated 2 years ago
- Perform text mining for identification of HPO terms in free text from scientific publication.☆12Updated 4 months ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆13Updated last week
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species☆13Updated 3 months ago
- Ontology Based Profile Matching☆17Updated 2 years ago
- A stitching platform for InXight☆16Updated 2 weeks ago
- Data Ingestion Pipeline for Monarch☆57Updated last year
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆15Updated this week
- Human Phenotype Ontology Workbench☆18Updated last year
- Integrated OBO ontology store☆43Updated this week
- source files for OBA (Ontology of Biological Attributes)☆27Updated last week
- ☆26Updated 5 years ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.☆13Updated 7 months ago
- A framework for empirical evaluation of phenotype matching and prioritisation☆12Updated this week
- Build for NCBITaxon☆27Updated 3 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆30Updated 9 months ago
- Communitiy-based Cell Line Ontology☆18Updated 4 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)☆33Updated this week
- PATO - the Phenotype And Trait Ontology☆58Updated last week
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 3 months ago
- ☆23Updated 3 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆44Updated 3 months ago