Alternatives and similar repositories for phenopacket-tools

Users that are interested in phenopacket-tools are comparing it to the libraries listed below

• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆81Updated last month
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆57Updated this week
• ga4gh / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆90Updated last week
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆60Updated last week
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated 2 years ago
• monarch-initiative / phenopacket-store
  Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
  ☆26Updated last week
• monarch-initiative / phenol
  phenol: Phenotype ontology library
  ☆24Updated 3 weeks ago
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆15Updated last month
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated this week
• monarch-initiative / phenomics-assistant
  LLM retrieval augmented generation agent for the Monarch Knowledge graph.
  ☆26Updated 2 weeks ago
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• obophenotype / cell-ontology
  An ontology of cell types
  ☆182Updated this week
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated last month
• phenopackets / phenopacket-format
  ☆26Updated 6 years ago
• biopragmatics / bioregistry
  📮 An integrative registry of biological databases, ontologies, and nomenclatures.
  ☆136Updated last week
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 2 months ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 6 months ago
• OntoGene / OGER
  ☆24Updated 4 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆25Updated last year
• monarch-initiative / monarch-disease-ontology-RETIRED
  THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
  ☆17Updated 4 years ago
• Planteome / plant-trait-ontology
  Explore the Plant Trait Ontology on the Planteome site.
  ☆47Updated this week
• geneontology / go-site
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
  ☆46Updated this week
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆74Updated 2 weeks ago
• Knowledge-Graph-Hub / kg-microbe
  ☆20Updated this week
• EBISPOT / DUO
  Ontology for consent codes and data use requirements
  ☆67Updated 3 years ago
• Knowledge-Graph-Hub / kg-registry
  A simple registry for KGHub projects
  ☆18Updated last week
• OBOFoundry / COB
  An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)
  ☆44Updated last month
• TheJacksonLaboratory / loinc2hpoAnnotation
  loinc2hpo Annotation Data
  ☆25Updated 3 years ago
• ga4gh-beacon / specification
  GA4GH Beacon specification.
  ☆32Updated 2 years ago