phenopackets / phenopacket-tools
An app and library for building, conversion, and validation of GA4GH Phenopackets.
β13Updated last year
Alternatives and similar repositories for phenopacket-tools:
Users that are interested in phenopacket-tools are comparing it to the libraries listed below
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.β22Updated last week
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β52Updated last week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.β79Updated last month
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhubβ32Updated last year
- Repository for the GA4GH phenopacket schemaβ84Updated 6 months ago
- phenol: Phenotype ontology libraryβ23Updated 2 weeks ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.β24Updated 3 weeks ago
- Python Phenopacket Toolsβ16Updated 2 months ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)β33Updated this week
- loinc2hpo Annotation Dataβ24Updated 2 years ago
- Integrated OBO ontology storeβ44Updated last month
- Medical action ontologyβ55Updated 3 months ago
- Ontology cross-reference and mapping serviceβ18Updated 8 months ago
- A stitching platform for InXightβ16Updated this week
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across speciesβ13Updated last month
- Ontology Based Profile Matchingβ17Updated 2 years ago
- Perform text mining for identification of HPO terms in free text from scientific publication.β12Updated 9 months ago
- β26Updated 5 years ago
- Github repo for the Experimental Factor Ontology (EFO)β57Updated this week
- Human Phenotype Ontology Workbenchβ18Updated last year
- a web application to search and navigate the Human Phenotype Ontology (HPO)β14Updated last month
- β24Updated 4 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT pluginβ13Updated last week
- Ontology for consent codes and data use requirementsβ67Updated 2 years ago
- Draft cell type definitions from data - candidates for inclusion in CLβ12Updated 2 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontologyβ31Updated last year
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.β14Updated 3 weeks ago
- Map your disease and phenotype terms to the Open Targets platform ontologyβ21Updated 4 months ago
- β14Updated 2 months ago
- Communitiy-based Cell Line Ontologyβ18Updated 9 months ago