Linear-time prediction of proteome-scale microbial protein interactions
☆40Jun 25, 2026Updated last month
Alternatives and similar repositories for FlashPPI
Users that are interested in FlashPPI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆257Jan 3, 2026Updated 7 months ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆18Dec 21, 2025Updated 7 months ago
- Python package for phage-host interaction prediction☆15Jul 22, 2026Updated 2 weeks ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 7 months ago
- ☆19Aug 31, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Opinionated viral metagenomics workflow☆16Updated this week
- One protein is all you need (ICLR 2026)☆115Updated this week
- ☆93Feb 11, 2026Updated 5 months ago
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆15Feb 26, 2025Updated last year
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆36Jun 10, 2026Updated last month
- A community effort to create a shared resource for HMM-based RdRp discovery☆17Jul 14, 2026Updated 3 weeks ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆15Dec 13, 2022Updated 3 years ago
- Official repository for IDiom☆17Jun 29, 2026Updated last month
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assembling phage particles one protein at a time☆25Updated this week
- ☆23Apr 8, 2026Updated 3 months ago
- ☆59Jul 15, 2026Updated 3 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆54Jul 21, 2026Updated 2 weeks ago
- Profluent-E1 family of Protein Encoder Models☆114Mar 11, 2026Updated 4 months ago
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 5 months ago
- ☆24Dec 5, 2018Updated 7 years ago
- ☆148May 18, 2026Updated 2 months ago
- The viral taxonomic assignment pipeline☆45Apr 16, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PLM-interact: extending protein language models to predict protein-protein interactions.☆72Aug 29, 2025Updated 11 months ago
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆210May 13, 2026Updated 2 months ago
- ☆19Apr 13, 2026Updated 3 months ago
- ☆258Feb 12, 2026Updated 5 months ago
- ☆16Mar 19, 2026Updated 4 months ago
- An efficient protein structural alignment search algorithm☆16Sep 17, 2025Updated 10 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆84Jul 28, 2026Updated last week
- ☆12Jun 3, 2025Updated last year
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆21Oct 26, 2024Updated last year
- An intelligent command line interface for ChimeraX☆24Jun 14, 2026Updated last month
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆54Jun 22, 2026Updated last month
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 4 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆63Apr 6, 2026Updated 3 months ago