isb-cgc / Community-Notebooks
☆13Updated 2 months ago
Alternatives and similar repositories for Community-Notebooks:
Users that are interested in Community-Notebooks are comparing it to the libraries listed below
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated this week
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated last week
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆24Updated last month
- Tutorials for multimodal omics data analysis☆14Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 2 months ago
- ☆54Updated last year
- ☆47Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆34Updated 2 years ago
- Using BCR and expression for sequence embedding☆21Updated 3 weeks ago
- Python package to interactively annotate histological images within a jupyter notebook☆16Updated 6 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆54Updated 2 years ago
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆24Updated 5 months ago
- Course Materials for Genomics Data Mining☆22Updated 3 months ago
- Explore and download data from the recount3 project☆34Updated 5 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆38Updated 4 months ago
- Code used for muti cellular factor analysis☆13Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- .h5mu files interface for Seurat☆29Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 3 months ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆22Updated 6 months ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated 2 months ago
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆20Updated last year