Deep-MI / BrainPrint-legacy
Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
☆20Updated 4 years ago
Alternatives and similar repositories for BrainPrint-legacy:
Users that are interested in BrainPrint-legacy are comparing it to the libraries listed below
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆48Updated 9 months ago
- BIDS app wrapping recon-all from FreeSurfer☆42Updated 4 months ago
- A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.☆43Updated 12 years ago
- CIVET Installer☆26Updated 3 years ago
- ☆10Updated 3 years ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆51Updated last year
- Processing tools for high-resolution neuroimaging☆72Updated 4 months ago
- For calculating exact geodesic distances on cortical surface meshes☆53Updated 7 months ago
- ☆35Updated 3 years ago
- Tools for MRI mouse brain morphometry☆31Updated 8 years ago
- Intensity normalization of structural MRIs using RAVEL☆29Updated last year
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆33Updated last week
- dMRI based fiber tracking using parallel transport tractography☆26Updated last month
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 3 months ago
- precon_all surface pipline☆20Updated last year
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆25Updated 2 weeks ago
- Using ANTs to process multiple MR image types for a single subject☆24Updated 7 years ago
- Scripts to prepare MP2RAGE for Freesurfer☆26Updated last year
- Multi-site dMRI harmonization☆47Updated this week
- small mammals brain MRI☆16Updated last year
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆64Updated last week
- A Python project that provides a wrapping over the FreeSurfer software interface.☆9Updated 5 years ago
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆92Updated 3 weeks ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated 9 months ago
- Code used for Hippocampus Anterior/Posterior gene expression and neuroimaging analyses☆10Updated last year
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆37Updated 11 months ago
- Linear framework to combine tractography and tissue micro-structure estimation with diffusion MRI☆46Updated last week
- Plotting 4 brain surface views on a single matplotlib figure☆12Updated 3 years ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆67Updated last year