Alternatives and similar repositories for biol217_2025

Users that are interested in biol217_2025 are comparing it to the libraries listed below

• NFDI4Microbiota / nfdi4microbiota-knowledge-base
  The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de
  ☆30Updated last week
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆202Updated 7 months ago
• rohansachdeva / tandem_repeats
  ☆14Updated 3 years ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆144Updated last year
• WallauBioinfo / EEfinder
  ☆10Updated 5 months ago
• songweizhi / Tax4Fun2_short_tutorial
  A short tutorial for Tax4Fun2
  ☆21Updated last year
• Ecogenomics / GTDBTk
  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
  ☆541Updated last week
• marbits-icm / marbits-public
  ☆17Updated 2 months ago
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆179Updated last week
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆434Updated last year
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆223Updated 5 months ago
• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆97Updated 9 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆545Updated last week
• geronimp / enrichM
  Toolbox for comparative genomics of MAGs
  ☆85Updated last week
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆256Updated last month
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆243Updated 2 years ago
• RVanDamme / MUFFIN
  hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
  ☆69Updated 6 months ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆265Updated 9 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆441Updated 2 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆332Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆370Updated 4 months ago
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆294Updated last week
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆308Updated 2 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆355Updated 3 years ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆310Updated 6 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆219Updated last month
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆382Updated 2 months ago
• bioinformatics-centre / kaiju
  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
  ☆290Updated 4 months ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆354Updated this week
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆171Updated last year