MueFab / genie

Related projects: ⓘ

• lh3 / ksw2
  Global alignment and alignment extension
  ☆127Updated last year
• nanoporetech / vbz_compression
  VBZ compression plugin for nanopore signal data
  ☆38Updated 2 years ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆152Updated 6 months ago
• marbl / HG002
  A complete diploid human genome
  ☆91Updated last week
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆66Updated 2 years ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆56Updated 7 months ago
• nanoporetech / scrappie
  Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
  ☆90Updated 2 years ago
• pangenome / odgi
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
  ☆191Updated last week
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆122Updated 7 months ago
• rvaser / spoa
  SIMD partial order alignment tool/library
  ☆157Updated 9 months ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆51Updated last year
• human-pangenomics / hpp_pangenome_resources
  ☆94Updated 11 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆102Updated 3 months ago
• human-pangenomics / HPP_Year1_Assemblies
  Assemblies from HPP Year 1 production
  ☆64Updated last year
• LooseLab / readfish
  CLI tool for flexible and fast adaptive sampling on ONT sequencers
  ☆168Updated last week
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆78Updated 7 months ago
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆141Updated this week
• ratschlab / metagraph
  Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
  ☆111Updated 2 weeks ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆99Updated this week
• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆115Updated 3 years ago
• bcgsc / biobloom
  Create Bloom filters for a given reference and then use it to categorize sequences
  ☆75Updated 6 months ago
• maickrau / GraphAligner
  ☆255Updated 3 weeks ago
• kaist-ina / BWA-MEME
  BWA-MEME: Faster BWA-MEM2 using learned-index
  ☆109Updated 2 months ago
• sfu-compbio / compression-benchmark
  ☆22Updated 7 years ago
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆67Updated last month
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆111Updated 4 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆98Updated 4 months ago
• smarco / WFA-paper
  Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
  ☆200Updated 2 years ago
• ekg / seqwish
  alignment to variation graph inducer
  ☆143Updated 5 months ago
• marbl / ModDotPlot
  ☆111Updated 2 weeks ago