maxschelski / figureflowLinks
Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.
☆17Updated 8 months ago
Alternatives and similar repositories for figureflow
Users that are interested in figureflow are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Utilities for formatting matplotlib figures☆31Updated 9 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆174Updated 7 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Linking napari layers with Matplotlib plots☆42Updated last week
- Cell tracking and segmentation software☆159Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Lectures for a napari training course☆51Updated 2 years ago
- ☆22Updated 2 years ago
- ☆20Updated 7 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Block-wise task scheduling for large nD volumes.☆32Updated 8 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 2 months ago
- The ImageJ framework for quantification of neuronal anatomy☆53Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Gamified image segmentation quality estimation☆19Updated 7 months ago
- Discover, install, and share napari plugins☆54Updated last month
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 11 months ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- Process images using SimpleITK in napari☆23Updated 7 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆30Updated 7 months ago
- StarDist plugin for napari☆38Updated last year
- Tools for distributed alignment of massive images☆89Updated last week
- Tutorials for the book.☆15Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Cookiecutter for napari plugins☆71Updated last year
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago