maxschelski / figureflow
Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.
☆15Updated 3 weeks ago
Alternatives and similar repositories for figureflow:
Users that are interested in figureflow are comparing it to the libraries listed below
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Linking napari layers with Matplotlib plots☆40Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- StarDist plugin for napari☆37Updated 7 months ago
- 1d plotting in napari-based canvas.☆26Updated last week
- Utilities for formatting matplotlib figures☆31Updated last month
- Process images using SimpleITK in napari☆20Updated 5 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆46Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- ☆47Updated 5 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆20Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- Lectures for a napari training course☆50Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆58Updated 2 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆72Updated 3 months ago
- ☆17Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated 2 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- ☆29Updated last year
- ☆15Updated 7 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆63Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- Particle tracking by solving linear assignment problem.☆49Updated 3 weeks ago
- A self-supervised denoising algorithm.☆24Updated 11 months ago
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- ☆16Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 7 months ago