maxschelski / figureflowLinks
Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.
☆16Updated 6 months ago
Alternatives and similar repositories for figureflow
Users that are interested in figureflow are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆169Updated 5 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Linking napari layers with Matplotlib plots☆42Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 3 weeks ago
- Lectures for a napari training course☆51Updated 2 years ago
- Utilities for formatting matplotlib figures☆31Updated 8 months ago
- ☆22Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 6 months ago
- ☆19Updated 5 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Gamified image segmentation quality estimation☆17Updated 5 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 10 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 9 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Tools for distributed alignment of massive images☆87Updated last month
- Cell tracking and segmentation software☆150Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- ☆51Updated 5 months ago
- 1d plotting in napari-based canvas.☆26Updated this week
- StarDist plugin for napari☆39Updated last year
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated 2 weeks ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆35Updated last year
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 weeks ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week