Functions to manipulate and visualize microbial community data
☆14May 29, 2026Updated 4 months ago
Alternatives and similar repositories for tidytacos
Users that are interested in tidytacos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 7 months ago
- mGEMS Genomic epidemiology with mixed samples☆17Sep 4, 2024Updated 2 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- random collection of scripts used to process sequences☆10Jun 30, 2026Updated 3 months ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- A way to extract specific information from CAZy☆13Nov 16, 2024Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated last year
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆28Oct 6, 2026Updated last week
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆10Aug 26, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Toggle Referrer Add-on for Firefox☆20Mar 6, 2026Updated 7 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- ☆28May 22, 2025Updated last year
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆170Apr 23, 2025Updated last year
- A repository for my work on rCRUX☆14Jun 21, 2024Updated 2 years ago
- ☆18May 7, 2023Updated 3 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated 2 years ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A data analysis package for high-dimensional, multi-block data.☆13Jan 13, 2022Updated 4 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 2 weeks ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆19Jul 31, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- Interactive maps with R and Leaflet☆24Oct 20, 2023Updated 2 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- 😎 Awesome list of tools and projects with the awesome LangChain framework☆19Oct 17, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- Amplicon sequencing variants from modern nanopore / HiFi long read amplicons☆65Updated this week
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 4 months ago
- STT-4230 / STT-6230 R pour scientifique - Notes de cours☆12Dec 16, 2022Updated 3 years ago
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated 3 weeks ago
- vaginal microbiota☆13Jan 21, 2025Updated last year
- ArcticIce Studios nord, and northern inspired palettes from the Group of Seven.☆52Aug 29, 2019Updated 7 years ago