lukasz-migas / msalignLinks
Python implementation of MATLAB's msalign function
☆11Updated 3 weeks ago
Alternatives and similar repositories for msalign
Users that are interested in msalign are comparing it to the libraries listed below
Sorting:
- Algorithms to align 1D signals via cross correlation and likelihood maximization.☆72Updated 6 years ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Napari gaming☆17Updated 4 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆27Updated this week
- ilastik plugin for napari☆14Updated last month
- Various parts made for fluorescence microscopy + optics work☆16Updated 6 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 10 months ago
- Optimize image processing workflows in napari☆17Updated 9 months ago
- Visualise brainreg registration output☆10Updated 4 years ago
- Fusing image tiles with dask array's map_blocks☆31Updated last year
- This is a repository for the Automated Microscopy Control Environment.☆10Updated 4 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated last week
- (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.☆12Updated 7 years ago
- PSFj - Know your microscope fluorescence☆24Updated 5 years ago
- Notebooks for VoidSeg☆17Updated 6 years ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Updated 2 months ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Tool for segmentation in bioimaging☆35Updated this week
- ☆15Updated 3 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- N-dimensional, multiresolution file format for Micro-Manager☆14Updated 5 months ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- ☆18Updated 6 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated 7 months ago
- Linking napari layers with Matplotlib plots☆43Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Updated 11 months ago
- python tools for BigDataViewer☆22Updated last year