Kuhlman-Lab / proteinmpnn
our in-house version of ProteinMPNN
☆11Updated 2 months ago
Alternatives and similar repositories for proteinmpnn:
Users that are interested in proteinmpnn are comparing it to the libraries listed below
- code for SeqDance, a biophysics-informed protein language model☆20Updated 2 months ago
- ☆41Updated 4 months ago
- Modelling protein conformational landscape with Alphafold☆37Updated last week
- Efficient manipulation of protein structures in Python☆50Updated 2 months ago
- Graphormer Based Protein Sequence Design☆24Updated 11 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 4 months ago
- ☆44Updated 2 weeks ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆38Updated 8 months ago
- ☆77Updated 3 months ago
- A fast sampling and analysis tool for biomolecules☆15Updated last month
- ☆51Updated 9 months ago
- Extension of ThermoMPNN for double mutant predictions☆19Updated this week
- ☆33Updated this week
- ☆33Updated 9 months ago
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆25Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated last year
- ☆72Updated 8 months ago
- ☆19Updated 2 months ago
- No description yet.☆13Updated 5 months ago
- Baseline model for PPB-Affinity benchmark data☆19Updated last month
- Generative diverse protein backbones by protein language model☆29Updated last month
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆44Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆35Updated last month
- To become an implementation of AlphaFold3 based on Uni-Fold.☆18Updated 7 months ago
- A bunch of shell utilities for dealing the silent files☆54Updated last month
- Toolkit for alphafold3 input and output files☆59Updated last month
- Convert coarse-grained protein structure to all-atom model☆36Updated 6 months ago
- Introduction to cyclic peptide simulations and our group's protocols.☆11Updated last year
- A benchmark for 3D biomolecular structure prediction models☆52Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆35Updated 3 months ago