Alternatives and similar repositories for proteinmpnn

Users that are interested in proteinmpnn are comparing it to the libraries listed below

• baker-laboratory / CA_RFDiffusion
  ☆75Updated 6 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 3 months ago
• bene837 / af2seq
  ☆46Updated last year
• Kuhlman-Lab / evopro
  ☆92Updated 2 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆106Updated 2 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 7 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 8 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 2 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆60Updated 2 weeks ago
• bunzela / AIzymes
  ☆61Updated last month
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 4 months ago
• sokrypton / af2bind
  ☆52Updated 3 weeks ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 9 months ago
• ELELAB / RosettaDDGPrediction
  ☆83Updated 3 weeks ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated last month
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆58Updated last year
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆44Updated 4 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆85Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated 2 months ago
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆46Updated 2 weeks ago
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆25Updated last year
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆113Updated last month
• kiharalab / Distance-AF
  Public version for Distance-AF
  ☆29Updated 4 months ago
• danny305 / StabilityOracle
  ☆29Updated 2 months ago
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆96Updated last month
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 11 months ago