Alternatives and similar repositories for machine-learning:

Users that are interested in machine-learning are comparing it to the libraries listed below

• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆26Updated 2 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆28Updated 11 months ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• CutillasLab / DRUMLR
  ☆10Updated 2 years ago
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• nh2tran / DeepNovoAA
  DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
  ☆11Updated 4 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆38Updated 9 months ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆65Updated 8 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• hosseinshn / MOLI
  MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction
  ☆55Updated 4 years ago
• biomed-AI / GraphCS
  ☆14Updated 3 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆41Updated last week
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆50Updated 9 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• ml-jku / DNA-xLSTM
  ☆13Updated 4 months ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 3 years ago
• QData / ChromeGCN
  Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
  ☆33Updated 4 years ago
• iit-Demokritos / drug_id_mapping
  Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …
  ☆20Updated last year
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆45Updated 2 years ago
• bowang-lab / scFormer
  ☆19Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆30Updated last month
• fabriziocosta / GraphEmbed
  Compute a 2D embedding of a data matrix given supervised class information.
  ☆12Updated 5 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆56Updated this week