☆70Oct 29, 2022Updated 4 years ago
Alternatives and similar repositories for GROMACS-Protein-Ligand
Users that are interested in GROMACS-Protein-Ligand are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Dec 11, 2024Updated last year
- ☆24Mar 21, 2024Updated 2 years ago
- Self explained tutorial for molecular dynamics simulation using gromacs☆64Nov 16, 2024Updated last year
- ☆13Nov 29, 2024Updated last year
- Tutorial for the usage of the dcTMD approach and Langevin simulations employing the trypsin-benzamidine complex as example.☆11Jul 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A simple tool for creating and running MD simulations, using Jupyter and OpenMM☆12Aug 8, 2025Updated last year
- Python scripts to convert CGenFF stream files to GROMACS format☆57Apr 27, 2026Updated 6 months ago
- Normal Mode Wizard☆10Oct 8, 2023Updated 3 years ago
- iPBSA minimizes docked receptor-ligand conformations in implicit solvent and calculates the binding free energy with MM/PB(GB)SA methods.…☆13Oct 10, 2023Updated 3 years ago
- ☆40Feb 5, 2024Updated 2 years ago
- Oncogenicity Variant Interpreter for somatic variants☆16Sep 8, 2026Updated last month
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆65Jun 27, 2025Updated last year
- Pharmacon: A Molecular Dynamics Analysis Toolkit☆25Oct 5, 2026Updated last month
- The present study is finalised to determine the most advanced models in the literature capable of producing new high-quality molecules st…☆10Aug 31, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MolDockLab is a data-driven workflow developed to identify the best balanced consensus Structure-Based Virtual Screening (SBVS) workflow …☆14Jul 28, 2026Updated 3 months ago
- Generating dynamic structures through physics-based sampling of trRosettaX2-predicted inter-residue geometries☆11Mar 17, 2026Updated 7 months ago
- ☆16Aug 14, 2019Updated 7 years ago
- Gromacs tutorial PPTs and mdp files, also some plotting scripts☆73Jun 5, 2026Updated 5 months ago
- Free Energy Landscape analysis tool.☆32Aug 17, 2026Updated 2 months ago
- Fully automated high-throughput MD pipeline☆109Sep 18, 2026Updated last month
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆51Nov 4, 2025Updated last year
- ☆29Mar 16, 2023Updated 3 years ago
- Adaptive string method implementation in AmberTools23 and Amber22☆16Jan 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ISOform-guided prediction of epiTOPEs in cancer☆13Apr 10, 2023Updated 3 years ago
- ☆13May 26, 2022Updated 4 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 7 years ago
- GatorAffinity: Boosting Protein-Ligand Binding Affinity Prediction with Large-Scale Synthetic Structural Data☆36Apr 10, 2026Updated 6 months ago
- A versatile workflow for the generation of receptor-based pharmacophore models for virtual screening☆32May 22, 2025Updated last year
- Boltz2 Notebook – A streamlined Colab-based pipeline for protein structure prediction and binding affinity analysis using the Boltz2 deep…☆18Oct 27, 2026Updated last week
- A web based application predicts water solubility of any given chemical compound known or unknown☆14Jul 4, 2021Updated 5 years ago
- Yasara plugins for Gromacs users☆35Jan 8, 2024Updated 2 years ago
- GNN models and Datasets for Halogen BDEs☆15Nov 2, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Supporting Information for "Prediction of Organic Compound Aqueous Solubility Using Interpretable Machine Learning"☆13Jun 5, 2023Updated 3 years ago
- ☆10Feb 25, 2021Updated 5 years ago
- ☆39Jun 10, 2025Updated last year
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆94Updated this week
- Tutorial Files☆14Sep 13, 2025Updated last year
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆67Aug 2, 2025Updated last year
- ☆10May 31, 2021Updated 5 years ago