SMD-Bioinformatics-Lund / gens
☆13Updated 2 months ago
Alternatives and similar repositories for gens:
Users that are interested in gens are comparing it to the libraries listed below
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆31Updated last month
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆30Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- ☆39Updated 4 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Updated last year
- Variant Interpretation Pipeline☆23Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆39Updated 8 months ago
- TIDDIT - structural variant calling☆73Updated this week
- Structural Variant Index☆70Updated last month
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 3 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 5 months ago
- vembrane filters VCF records using python expressions☆57Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆20Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- The integrated pipeline for Indel detection☆17Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆29Updated last month