This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
☆11Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for C-VIEW
Users that are interested in C-VIEW are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Mar 4, 2019Updated 7 years ago
- 16S pipeline using qiime2 created with snakemake☆12Apr 29, 2026Updated last week
- MIRROR - beta diversity of species interaction networks☆15Mar 26, 2016Updated 10 years ago
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 7 years ago
- An implementation of the prediction strength algorithm from Tibshirani, Walther, Botstein, and Brown's "Cluster validation by prediction …☆18Feb 17, 2011Updated 15 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- IntelliGenes: AI/ML pipeline for predictive analyses using multi-genomic profiles.☆18Sep 4, 2024Updated last year
- Depth-weighted De-Mixing☆132Updated this week
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 9 months ago
- Docker image for GPGPU (OpenCL)☆12Mar 6, 2015Updated 11 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- A simple keylogger for macOS☆22Sep 29, 2021Updated 4 years ago
- Various scripts and supporting files used in building the Bio-Linux ISO☆11Sep 5, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- (已过期)深圳市人大代表列表☆15Jun 10, 2021Updated 4 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆16Jun 21, 2023Updated 2 years ago
- TiDB Community Website, https://tidb.net/blog & https://asktug.com☆12Apr 14, 2026Updated 3 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 9 months ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- MR project investigating the mediating role of mammographic density in the childhood body size and breast cancer relationship☆11May 14, 2024Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 4 months ago
- FOR my learing☆12Feb 19, 2026Updated 2 months ago
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆11Jul 5, 2024Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Updated this week
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆138Apr 20, 2026Updated 2 weeks ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆11Jan 6, 2023Updated 3 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Various tips and tricks☆21Apr 27, 2026Updated last week
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago