Alternatives and similar repositories for ONTIE:

Users that are interested in ONTIE are comparing it to the libraries listed below

• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated last month
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 6 months ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• nf-core / proteomicslfq
  Proteomics label-free quantification (LFQ) analysis pipeline
  ☆33Updated last month
• ISCB-Academy / Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
  ☆19Updated 2 years ago
• EBIvariation / CMAT
  ClinVar Mapping and Annotation Toolkit
  ☆19Updated last week
• arosenfeld / immunedb
  ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
  ☆21Updated 9 months ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆20Updated 8 months ago
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated 5 months ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• Sinnefa / SPV_Signaling_Pathway_Visualizer_v1.0
  Signaling Pathway Visualizer
  ☆9Updated 5 years ago
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆49Updated 5 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• lkuchenb / imseq
  IMSEQ - IMmunogenetic SEQuence Analysis
  ☆15Updated 6 years ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆21Updated last month
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated 6 months ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• AbbVie-ComputationalGenomics / genetic-evidence-approval
  ☆24Updated 4 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆22Updated 6 years ago
• TRON-Bioinformatics / neofox
  Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
  ☆29Updated 3 weeks ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆18Updated 4 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 weeks ago
• galaxy-genome-annotation / docker-jbrowse
  Docker image of JBrowse Genome Browser
  ☆14Updated 3 years ago