single-cell-data / TileDB-SOMA-MLLinks
SOMA PyTorch loaders
☆12Updated 4 months ago
Alternatives and similar repositories for TileDB-SOMA-ML
Users that are interested in TileDB-SOMA-ML are comparing it to the libraries listed below
Sorting:
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆82Updated 2 weeks ago
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆121Updated this week
- ☆10Updated 9 years ago
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Updated last week
- requirements, examples, and tests for expression matrix file formats☆22Updated 7 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Dimensionality reduction for single cell RNA-seq data☆36Updated 6 years ago
- Use cases for anndata.☆14Updated 8 months ago
- An analytics package for single cell data☆22Updated 3 years ago
- Utilities for large scale distributed single cell data processing☆24Updated 3 weeks ago
- Open Targets python framework for post-GWAS analysis☆52Updated this week
- Single cell analysis in Javascript☆22Updated 2 months ago
- Pathway-Regularized Matrix Factorization☆12Updated 5 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆22Updated 3 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 7 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆102Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- AnnData interoperability in R☆149Updated last week
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆47Updated last week
- R API and htmlwidget for Vitessce☆44Updated 5 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- ☆37Updated 3 weeks ago
- Signac☆26Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Annotated multivariate observation data in R☆52Updated 8 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated 2 months ago