Alternatives and similar repositories for MusiJ

Users that are interested in MusiJ are comparing it to the libraries listed below

• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆27Updated 5 years ago
• henrypinkard / Pygellan
  [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan
  ☆14Updated 5 years ago
• aherbert / gdsc-smlm
  GDSC Single Molecule Light Microscopy ImageJ Plugins
  ☆16Updated this week
• cleterrier / Utils
  ☆10Updated 9 months ago
• Endesfelder-Lab / SMLMComputational
  Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…
  ☆11Updated 3 years ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 4 months ago
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆29Updated 3 weeks ago
• jdeschamps / EMU
  A Micro-Manager plugin that loads easily reconfigurable user interfaces.
  ☆11Updated 2 years ago
• MicroscPSF / MicroscPSF-Py
  Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
  ☆42Updated 10 months ago
• quokka79 / DavLUT
  Generates colormaps (lookup tables) for MATLAB & ImageJ
  ☆11Updated 7 years ago
• napari-storm / napari-storm
  ☆12Updated 9 months ago
• MSiemons / REALM
  Adaptive Optics plugin for MicroManager
  ☆12Updated 3 years ago
• tlambert03 / PSFmodels
  Python bindings for scalar and vectorial models of the 3D microscope point spread function.
  ☆50Updated last year
• eguomin / regDeconProject
  code of the registration and deconvolution project
  ☆35Updated 4 years ago
• SebastienTs / MosaicExplorerJ
  An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
  ☆13Updated 3 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆67Updated 2 weeks ago
• lacan / microscopy-icons
  Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
  ☆11Updated 2 years ago
• sakoho81 / miplib
  A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
  ☆80Updated 3 years ago
• lob-epfl / sofitool
  SOFI simulation tool: a software package for simulating and testing super-resolution optical fluctuation imaging
  ☆16Updated 8 years ago
• TheDeanLab / navigate
  navigate - open source light-sheet microscope controls
  ☆37Updated this week
• AndrewGYork / tools
  Things we use regularly
  ☆29Updated 3 weeks ago
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆19Updated 2 weeks ago
• microscope-cockpit / cockpit
  Cockpit is a microscope graphical user interface. It is a flexible and easy to extend platform aimed at life scientists using bespoke mic…
  ☆38Updated 2 weeks ago
• SMLM-Challenge / Challenge2016
  Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016
  ☆16Updated 6 years ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated 2 years ago
• pymmcore-plus / pymmcore-gui
  Pure Python Micro-Manager GUI Application, built on pymmcore-plus
  ☆14Updated last week
• pymmcore-plus / napari-micromanager
  GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
  ☆71Updated this week
• zitmen / thunderstorm
  ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
  ☆101Updated 6 years ago
• adanog / MSSR
  MSSR Plugin
  ☆13Updated 10 months ago
• maweigert / biobeam
  GPU accelerated beam propagation tools for biological light tissue simulations
  ☆36Updated 6 years ago