This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.
☆11Aug 26, 2026Updated 2 months ago
Alternatives and similar repositories for Pangenome-Graphs-Workshop
Users that are interested in Pangenome-Graphs-Workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- ☆24Apr 15, 2024Updated 2 years ago
- Haploidy and Size Completeness Estimation☆15Apr 11, 2024Updated 2 years ago
- Information for the Intro to Cluster System Administration for Non-Sysadmins class☆10Dec 12, 2021Updated 4 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Predicting transcription factor binding in single cells through deep learning☆15Oct 14, 2022Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School☆67Updated this week
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- ☆18Oct 7, 2024Updated 2 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- A brief lightning talk on using Julia for research, allowing rapid prototyping of ideas alongside high performance at any scale.☆16Sep 30, 2022Updated 4 years ago
- A website to predict phenotypes of soybean by uploading .vcf files.☆18Mar 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- findGSEP package☆10Jul 27, 2024Updated 2 years ago
- ☆31Aug 18, 2026Updated 2 months ago
- Code for fuzzy monkeys.☆15Sep 22, 2026Updated last month
- Social Network Analysis and STEM Education is designed to prepare researchers to apply network analysis in order to better understand and…☆16Jul 14, 2025Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- The repository contains all the code for the paper amino acid encoding using deep learning application☆20Jul 5, 2024Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆45Aug 19, 2026Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆110Oct 7, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 7 months ago
- 3D metrics for surfaces and objects☆17May 19, 2026Updated 5 months ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- De novo metagenome assembler☆15Mar 29, 2023Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- TelomereSearch - identify telomeric repeats from genome assemblies☆12Jul 5, 2021Updated 5 years ago
- Zinc Database Downloader & Merger☆16Mar 29, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automated Machine Learning for Environmental Data-Driven Genome Prediction☆17Sep 12, 2025Updated last year
- ☆10Sep 4, 2024Updated 2 years ago
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆42Updated this week
- Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans☆10Dec 4, 2024Updated last year
- Metagenome analysis using the Kraken software suite☆38Sep 29, 2022Updated 4 years ago
- Supporting python library for "Deep Learning for Biology".☆32Mar 19, 2026Updated 7 months ago
- ☆23Oct 31, 2025Updated 11 months ago