Tutorial on building a computing cluster for bioinformatics
☆88Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for biocluster
Users that are interested in biocluster are comparing it to the libraries listed below
Sorting:
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 3 years ago
- ☆22Apr 2, 2015Updated 10 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last week
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Plot allele frequencies in VCF files☆11Jun 4, 2019Updated 6 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- ☆10Apr 10, 2016Updated 9 years ago
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- NiPTUNE. A Python library for NIPT analyses.☆12Nov 22, 2021Updated 4 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- bioinformatics R test code☆14Feb 1, 2026Updated last month
- Sequana: a set of Snakemake NGS pipelines☆152Updated this week
- Pipelines for NGS, imputation, gwas, ...☆29Dec 18, 2019Updated 6 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 2 weeks ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆18Sep 19, 2022Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated last month
- perSVade: personalized Structural Variation detection☆41Jan 22, 2026Updated last month
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Mar 9, 2023Updated 2 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 2 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32May 14, 2019Updated 6 years ago
- Golang for Bioinformatics☆32Aug 16, 2016Updated 9 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Aug 9, 2023Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 6 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- ☆24Nov 9, 2017Updated 8 years ago