Alternatives and similar repositories for BioAutoML:

Users that are interested in BioAutoML are comparing it to the libraries listed below

• Bonidia / MathFeature
  Feature Extraction Package for Biological Sequences
  ☆57Updated 3 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆32Updated 9 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆75Updated 2 weeks ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆19Updated last month
• Arcadia-Science / ProteinCartography
  a pipeline to build similarity maps of protein space
  ☆33Updated 3 months ago
• burstein-lab / genomic-nlp
  ☆24Updated 7 months ago
• liudan111 / EvoMIL
  Prediction of virus-host association using protein language models and multiple instance learning
  ☆16Updated 9 months ago
• alondmnt / codon-bias
  Python package of codon usage bias analysis tools
  ☆16Updated 3 weeks ago
• cansyl / ECPred
  ☆16Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆123Updated 4 months ago
• Rostlab / goPredSim
  ☆44Updated 4 months ago
• nbrg-ppcu / prokbert
  ☆14Updated last week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆102Updated 7 months ago
• BackofenLab / CRISPRloci
  ☆14Updated last year
• ntranoslab / esm-variants
  ☆71Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 2 months ago
• ayaanhossain / ViennaRNA
  ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
  ☆14Updated 2 years ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆37Updated 3 months ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• TattaBio / gLM2
  ☆61Updated 5 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆31Updated 6 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated 5 months ago
• lingxusb / megaDNA
  ☆54Updated 5 months ago
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆14Updated 3 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆25Updated last year
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆22Updated 4 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆76Updated 3 weeks ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆79Updated this week