Alternatives and similar repositories for BioAutoML

Users that are interested in BioAutoML are comparing it to the libraries listed below

• Bonidia / MathFeature
  Feature Extraction Package for Biological Sequences
  ☆65Updated 3 months ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆61Updated 2 years ago
• liudan111 / EvoMIL
  Prediction of virus-host association using protein language models and multiple instance learning
  ☆20Updated last year
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• lvrcek / GNNome-assembly
  Learning to untangle genome assembly with graph neural networks.
  ☆72Updated 11 months ago
• macwiatrak / Bacformer
  Modeling whole bacterial genome as a sequence of proteins.
  ☆62Updated last week
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆28Updated 2 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 2 weeks ago
• Rostlab / goPredSim
  ☆48Updated 10 months ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆47Updated last month
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• eternagame / DegScore
  Arnie-based DegScore tool.
  ☆27Updated 3 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 7 months ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• burstein-lab / genomic-nlp
  ☆27Updated last year
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆42Updated 3 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• tlawrence3 / amPEPpy
  ☆29Updated last year
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆35Updated 2 months ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 2 years ago
• rnajena / bertax_training
  Training scripts for BERTax
  ☆10Updated last year
• Weeks-UNC / RNAvigate
  Very flexible tools for plotting and analyzing all kinds of RNA structure data
  ☆14Updated 4 months ago
• lbcb-sci / GNNome
  A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
  ☆48Updated last month
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated 2 weeks ago
• gagneurlab / dependencies_DNALM
  Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements
  ☆18Updated 7 months ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• HLTCHKUST / snp2vec
  Code and dataset for SNP2Vec paper
  ☆21Updated 2 years ago
• bio-ontology-research-group / deepgo
  Function prediction using a deep ontology-aware classifier
  ☆84Updated 2 years ago