Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!
☆108Feb 18, 2025Updated last year
Alternatives and similar repositories for APPT
Users that are interested in APPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codebase and CLI for PLAPT: A state-of-the-art protein-ligand binding affinity model for drug discovery☆115Mar 27, 2025Updated last year
- ☆37Feb 5, 2026Updated 2 months ago
- A pipeline that used ML model based on Rosetta descriptors to predict the binding affinity of protein-protein complexes☆52Oct 27, 2025Updated 5 months ago
- WaterGate: An Accessible Computational Analysis of Flooding Patterns☆19Aug 23, 2024Updated last year
- ☆14Oct 5, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Plugin for folding sequences directly in PyMOL☆117Aug 4, 2025Updated 8 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Mar 25, 2026Updated 2 weeks ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated last year
- ☆30Aug 27, 2025Updated 7 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆22Oct 31, 2025Updated 5 months ago
- Rank binders by structure modeling☆16Updated this week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆122May 27, 2025Updated 10 months ago
- ☆243Feb 12, 2026Updated last month
- ☆11May 16, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆92Jun 11, 2025Updated 10 months ago
- ☆20Mar 20, 2025Updated last year
- ☆27Jun 16, 2025Updated 9 months ago
- ☆61Mar 31, 2026Updated last week
- composite-objective protein design☆296Updated this week
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated last month
- Generative modeling of molecular dynamics trajectories☆206Mar 22, 2026Updated 2 weeks ago
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 8 months ago
- Efficient manipulation of protein structures in Python☆67Sep 27, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆33Feb 12, 2026Updated last month
- ESMDynamic repo☆22Feb 25, 2026Updated last month
- Simulation-Enabled Estimation of Kinetic Rates - Version 2☆35Dec 10, 2025Updated 4 months ago
- [ICLR 2025 Spotlight] Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions☆44Mar 10, 2025Updated last year
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated 11 months ago
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆118Jan 9, 2026Updated 3 months ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆27Sep 13, 2024Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Mar 18, 2026Updated 3 weeks ago
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆42Dec 26, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆17Dec 23, 2024Updated last year
- ☆37Aug 28, 2023Updated 2 years ago
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆77Feb 2, 2026Updated 2 months ago
- Protein Engineering via Exploration of an Energy Landscape☆133Mar 10, 2026Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- It's a package for evaluation of predicted poses, right?☆74Mar 27, 2026Updated 2 weeks ago
- A drop-in replacement for Rosetta Relax☆27Jan 30, 2026Updated 2 months ago