Alternatives and similar repositories for ads1-notebooks:

Users that are interested in ads1-notebooks are comparing it to the libraries listed below

• BenLangmead / ads1-slides
  Slides for Algorithms for DNA Sequencing Coursera class
  ☆327Updated 9 years ago
• BenLangmead / comp-genomics-class
  Code and examples for JHU Computational Genomics class
  ☆299Updated 6 months ago
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆254Updated 4 years ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆523Updated 2 months ago
• jtleek / genstats
  Statistics course for JHU Genomic Data Science Sequence
  ☆155Updated 9 years ago
• lanttern / DATA_SCIENCE_IN_BIOLOGY
  projects using galaxy, python, linux command line to analyze sequencing data
  ☆55Updated 4 years ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆979Updated last month
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 4 years ago
• quinlan-lab / applied-computational-genomics
  Applied Computational Genomics Course at UU: Spring 2020
  ☆968Updated last year
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
  ☆219Updated 5 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆790Updated 8 months ago
• jtleek / genomicspapers
  The Leek group guide to genomics papers
  ☆488Updated 6 years ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆497Updated this week
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,365Updated last year
• samtools / hts-specs
  Specifications of SAM/BAM and related high-throughput sequencing file formats
  ☆673Updated last week
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆500Updated last month
• kyclark / biofx_python
  Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
  ☆225Updated 3 years ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆718Updated this week
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,016Updated this week
• Illumina / strelka
  Strelka2 germline and somatic small variant caller
  ☆366Updated 3 years ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆602Updated last year
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆483Updated 4 years ago
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,452Updated 8 months ago
• cole-trapnell-lab / cufflinks
  ☆315Updated 5 years ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆674Updated 2 weeks ago
• freebayes / freebayes
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.
  ☆821Updated 2 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,002Updated 3 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆167Updated 4 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆802Updated 9 months ago
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆474Updated 3 years ago