hbc / projects
In-progress projects at Harvard School of Public Health Bioinformatics Core
☆40Updated 6 years ago
Related projects: ⓘ
- ☆21Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- Next-Generation Sequencing(NGS) toolkits.☆44Updated 8 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆78Updated last year
- Multi-sample somatic variant caller☆48Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆47Updated 5 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆74Updated 5 months ago
- An awk-like VCF parser☆54Updated 8 months ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- See the main fork of this repository here >>>☆38Updated last month
- simple comparison of snakemake, nextflow and cromwell/wdl☆46Updated 4 years ago
- ☆82Updated 2 years ago
- Galaxy RNA workbench☆38Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆55Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- ☆78Updated 10 years ago
- create a gemini-compatible database from a VCF☆55Updated 3 years ago
- Scalable RNA-seq analysis☆73Updated 3 years ago
- microRNA profiling pipeline☆71Updated 2 years ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆52Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- The Genome Modeling System installer☆78Updated 9 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆38Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago