hbc / projects
In-progress projects at Harvard School of Public Health Bioinformatics Core
☆40Updated 6 years ago
Alternatives and similar repositories for projects:
Users that are interested in projects are comparing it to the libraries listed below
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- ☆82Updated 3 years ago
- ☆68Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- The Genome Modeling System installer☆78Updated 9 years ago
- ☆78Updated 10 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 4 years ago
- Multi-sample somatic variant caller☆49Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆78Updated last week
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Generic human DNA variant annotation pipeline☆57Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 9 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year