reinhardh / dna_data_storage
Error correction scheme for storing information on DNA
☆12Updated 7 years ago
Alternatives and similar repositories for dna_data_storage:
Users that are interested in dna_data_storage are comparing it to the libraries listed below
- DNA Archive Simulator (DNArSim) is a memory channel model that simulate the entire DNA Data Storage process: from synthesis to basecallin…☆9Updated 3 years ago
- Error correction scheme for storing information on DNA using Reed Solomon codes☆35Updated 3 years ago
- BGI DNA Storage Kit☆39Updated last month
- Code repository for 2019 NanoporeTERs paper.☆7Updated 4 years ago
- nucleic acid folding☆88Updated 6 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆153Updated 5 months ago
- Python bindings for the parasail C library.☆97Updated 5 months ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆120Updated 4 years ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆233Updated 4 months ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆9Updated 4 months ago
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆17Updated 3 months ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆104Updated this week
- Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency☆233Updated 4 years ago
- Models, design algorithms, and other software related to Salis lab publications☆28Updated 3 months ago
- General low-level API☆49Updated 2 years ago
- A deep learning-based tool to identify splice variants☆420Updated 11 months ago
- A repository for GeneLab Training documentation.☆32Updated 3 weeks ago
- Learning to untangle genome assembly with graph neural networks.☆72Updated 3 months ago
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆39Updated 4 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆54Updated last year
- Protobuf and gRPC specifications for the MinKNOW API☆57Updated 2 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆203Updated last week
- ClairS - a deep-learning method for long-read somatic small variant calling☆79Updated 2 months ago
- A python library for creating simulated regulatory DNA sequences☆38Updated last year
- DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration☆17Updated last year
- An RNA manipulation library.☆54Updated last year
- ☆64Updated 7 months ago
- Transcriptic CLI & Python Client Library☆48Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆104Updated 3 months ago