Amelie-Schreiber / esm2_masked_lm
Various Ideas for Protein Masked LM with ESMFold/ESM-2
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for esm2_masked_lm
- ☆26Updated 11 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- Transformer Based Language Model for Peptide Property Prediction☆34Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated last month
- Fitness landscapes for antibodies☆51Updated 7 months ago
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆49Updated 10 months ago
- ☆30Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆54Updated this week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆52Updated last year
- ☆29Updated 4 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated 8 months ago
- ☆20Updated last month
- Code for humanization of antibody and nanobody☆25Updated 3 weeks ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆31Updated 6 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- A deep learning framework for predicting interactions between protein-protein interaction targets and modulators☆11Updated 11 months ago
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- Kinase–drug binding prediction with calibrated uncertainty quantification☆22Updated 10 months ago
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆29Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆42Updated 3 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆30Updated last week
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆23Updated this week
- An antibody-specific language model focusing on NGL prediction☆22Updated 3 months ago
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆52Updated 3 weeks ago
- ☆70Updated 7 months ago