Amelie-Schreiber / esm2_masked_lmLinks
Various Ideas for Protein Masked LM with ESMFold/ESM-2
☆15Updated 2 years ago
Alternatives and similar repositories for esm2_masked_lm
Users that are interested in esm2_masked_lm are comparing it to the libraries listed below
Sorting:
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- ☆71Updated 6 months ago
- ☆72Updated 5 years ago
- ☆28Updated 10 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆28Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆65Updated 10 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆37Updated 2 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆52Updated 3 months ago
- ☆68Updated 10 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆55Updated 9 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆117Updated 6 months ago
- Antibody-specific masked language model☆60Updated 2 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆40Updated 6 months ago
- Transformer Based Language Model for Peptide Property Prediction☆46Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 3 months ago
- ☆21Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆52Updated last month
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 2 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆91Updated this week
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆33Updated 2 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆46Updated 2 months ago
- ☆17Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆48Updated 2 months ago
- Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling☆18Updated 2 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated this week