Various Ideas for Protein Masked LM with ESMFold/ESM-2
☆15Aug 17, 2023Updated 2 years ago
Alternatives and similar repositories for esm2_masked_lm
Users that are interested in esm2_masked_lm are comparing it to the libraries listed below
Sorting:
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 10 months ago
- ☆13May 19, 2025Updated 9 months ago
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Nov 27, 2025Updated 3 months ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Molecular visualization for MDAnalysis with MolecularNodes in Blender☆18Mar 30, 2025Updated 11 months ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated last year
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Apr 23, 2024Updated last year
- AIMNet2: Fast, accurate and transferable neural network interatomic potential☆18Oct 17, 2024Updated last year
- DrugGen: Advancing Drug Discovery with Large Language Models and Reinforcement Learning Feedback☆21May 22, 2025Updated 9 months ago
- Collection of papers for Molecular Representation using AI☆34Feb 21, 2026Updated 2 weeks ago
- ☆23Jan 17, 2026Updated last month
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 5 months ago
- [EMNLP 2023] ReLM: Leveraging Language Models for Enhanced Chemical Reaction Prediction.☆22Jan 28, 2024Updated 2 years ago
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆21Feb 10, 2025Updated last year
- ☆27Feb 10, 2024Updated 2 years ago
- This repository contains information on the creation, evaluation, and benchmark models for the L+M-24 Dataset. L+M-24 will be featured as…☆30Jan 23, 2025Updated last year
- ☆32Oct 27, 2025Updated 4 months ago
- Baseline model for PPB-Affinity benchmark data☆35May 21, 2025Updated 9 months ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Jan 22, 2026Updated last month
- ☆10May 22, 2024Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- ☆32Feb 5, 2025Updated last year
- ☆33Aug 12, 2024Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆40Jun 12, 2024Updated last year
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆41Nov 20, 2025Updated 3 months ago
- ☆12Mar 28, 2025Updated 11 months ago
- Synthetic Accessibility via Fragment Assembly Generation☆19Feb 1, 2026Updated last month
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 3 months ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- ParaAntiProt: Paratope Prediction Using Antibody and Protein Language Models☆10Jul 16, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆87Jun 23, 2024Updated last year
- Fine-tuning Galactica and Gemma to operate on SMILES. Integrates into a molecular optimization algorithm.☆36Feb 20, 2025Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 9 months ago
- Learning the language of protein-protein interactions☆137Jan 12, 2026Updated last month
- ☆14Oct 27, 2025Updated 4 months ago
- Scalable genomic analysis pipelines, written in WDL☆11Feb 24, 2026Updated 2 weeks ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆48Jun 30, 2025Updated 8 months ago