Amelie-Schreiber / esm2_masked_lmLinks
Various Ideas for Protein Masked LM with ESMFold/ESM-2
☆15Updated 2 years ago
Alternatives and similar repositories for esm2_masked_lm
Users that are interested in esm2_masked_lm are comparing it to the libraries listed below
Sorting:
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆29Updated 2 weeks ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆37Updated 4 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- ☆71Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 4 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆46Updated last week
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated 2 weeks ago
- Extension of ThermoMPNN for double mutant predictions☆45Updated last month
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆24Updated 2 months ago
- ☆34Updated last year
- ☆50Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆55Updated last week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 5 months ago
- ☆25Updated 2 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆74Updated 3 months ago
- ☆44Updated last year
- ☆15Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆93Updated 3 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆76Updated 2 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Updated last year
- ☆39Updated last year
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆94Updated last month
- Metrics for our protein design competitions.☆35Updated last year
- ☆72Updated 5 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year