AlexandrovLab / SigProfilerPlottingRLinks
An R wrapper for running the SigProfilerPlotting framework
☆10Updated 7 months ago
Alternatives and similar repositories for SigProfilerPlottingR
Users that are interested in SigProfilerPlottingR are comparing it to the libraries listed below
Sorting:
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆95Updated 10 months ago
- R package of colors for the Buenrostro Lab☆84Updated 11 months ago
- ☆86Updated 4 years ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆153Updated 9 months ago
- An elegant package to visualize gene structures☆79Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆86Updated 6 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 3 weeks ago
- ATAC-seq Quality Control☆24Updated 3 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- An R interface to the MEME Suite☆52Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Multiscale embedded gene co-expression network analysis☆54Updated last year
- R package containing useful functions for mutational signature analysis☆83Updated last week
- HMMRATAC peak caller for ATAC-seq data☆99Updated 8 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 months ago
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆10Updated 3 years ago
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Updated last year
- ☆38Updated 2 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Quantifying copy number signatures from absolute copy number profiles☆24Updated 2 weeks ago
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- An R interface to enrichR☆91Updated 6 months ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆17Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago