Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing
☆13Oct 19, 2026Updated this week
Alternatives and similar repositories for DeepChopper
Users that are interested in DeepChopper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep Learning Processing Library for Biological Data☆13Updated this week
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Updated this week
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- ☆12Updated this week
- Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, …☆51Sep 23, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Jul 19, 2023Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆22Updated this week
- ☆17Feb 2, 2026Updated 8 months ago
- Tool for DNA species identification based on variation in short k-mer frequencies☆10Aug 4, 2026Updated 2 months ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A package to run real time analysis of nanopore methylation data.☆29Updated this week
- ☆30Dec 22, 2023Updated 2 years ago
- The integrated pipeline for Indel detection☆17Apr 29, 2018Updated 8 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Rust spy functions for testing purposes☆11Aug 24, 2019Updated 7 years ago
- ☆16Sep 28, 2026Updated 3 weeks ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆13Jul 23, 2026Updated 3 months ago
- To use Evo2 easily☆26Apr 7, 2026Updated 6 months ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆45Oct 9, 2025Updated last year
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆13Jun 12, 2024Updated 2 years ago
- ML phylogenetic inference for non-model organisms with short reads & assemblies☆15Oct 5, 2026Updated 2 weeks ago
- Proyecto de ejemplo de las Jornadas Cloud 2026: de una web estática en S3 + CloudFront a un backend serverless con Lambda, API Gateway, D…☆52Sep 18, 2026Updated last month
- The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequenci…☆12Apr 5, 2026Updated 6 months ago
- ☆10Mar 11, 2025Updated last year
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 7 years ago
- ☆11May 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DNA Archive Simulator (DNArSim) is a memory channel model that simulate the entire DNA Data Storage process: from synthesis to basecallin…☆10Dec 6, 2021Updated 4 years ago
- ☆11Feb 16, 2023Updated 3 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 3 years ago
- ☆14Oct 15, 2026Updated last week
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- 🎨 Hand-drawn icons, animated illustrations & empty states for Jetpack Compose scenes, pure Canvas, zero image assets, fully theme-able.☆39Oct 18, 2026Updated last week
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year