☆22Dec 15, 2022Updated 3 years ago
Alternatives and similar repositories for acdc-nn
Users that are interested in acdc-nn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- predict stability change upon mutation☆33Jun 28, 2024Updated 2 years ago
- Self-Consistent Neural Network for Protein Stability Prediction upon Mutations☆10Sep 22, 2021Updated 5 years ago
- Scoring methods for predicting the DDG upon protein mutation☆19Feb 20, 2023Updated 3 years ago
- Predicting the effect of mutations on protein stability using a simple orientational potential.☆21Jul 5, 2024Updated 2 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆58Apr 15, 2026Updated 6 months ago
- A Prot paper related materials☆11Sep 5, 2022Updated 4 years ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆51Mar 21, 2024Updated 2 years ago
- ☆13Jul 14, 2023Updated 3 years ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆21Oct 19, 2022Updated 4 years ago
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 6 years ago
- ☆11May 12, 2026Updated 5 months ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆21Jun 9, 2022Updated 4 years ago
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆120Dec 20, 2023Updated 2 years ago
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 3 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 8 years ago
- Target prediction☆14May 8, 2020Updated 6 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated 2 years ago
- A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts th…☆16Apr 4, 2025Updated last year
- a deep learning framework for essential protein prediction☆13Mar 24, 2023Updated 3 years ago
- Explainable Substructure Partition Fingerprint for Protein, Drug, and More (NeurIPS 19 LMRL Workshop)☆18Oct 30, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10May 31, 2021Updated 5 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- 一个用作课堂演示的简易MD引擎以及相关案例☆22Jul 31, 2026Updated 3 months ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated last year
- Command-line tools for protein structure analysis: convert PDB, mmCIF, PDBML, or XYZR files into atomic sphere data, then compute volumes…☆16Jul 25, 2026Updated 3 months ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 6 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 3 years ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Mar 7, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.☆12Feb 18, 2022Updated 4 years ago
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 6 years ago
- A simple workflow for minimum energy conformer search based on force field optimization methods (UFF and MMFF94) available from RDKit.☆13May 29, 2020Updated 6 years ago
- Model-based clustering package for mixed data☆13May 21, 2026Updated 5 months ago
- Open source code for AlphaFold.☆18Jun 9, 2024Updated 2 years ago
- ☆12May 3, 2025Updated last year
- ☆14Aug 22, 2022Updated 4 years ago