Code supporting the Protein Design Archive (PDA) database publication
☆16May 6, 2026Updated last month
Alternatives and similar repositories for chronowska-stam-wood-2024-protein-design-archive
Users that are interested in chronowska-stam-wood-2024-protein-design-archive are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code for The Protein Design Archive web application.☆10May 8, 2026Updated last month
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 7 months ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- ☆15Mar 28, 2025Updated last year
- An open-source project to visualize volumetric image series over multiple temporal axes and render animations of changing morphology.☆20Apr 25, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated 10 months ago
- Foldy: a web-based platform for interactive protein structure analysis☆29Oct 28, 2025Updated 7 months ago
- ☆17Mar 26, 2024Updated 2 years ago
- design pipeline for protein, nucleic acid, and small molecule☆42Mar 5, 2026Updated 3 months ago
- This package makes it easier for you to draw beautiful ternary diagram without pymatgen.☆23Apr 13, 2026Updated 2 months ago
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆28Sep 12, 2023Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- ☆53Apr 22, 2026Updated last month
- ☆17Feb 19, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 2 months ago
- ☆24May 19, 2025Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated last month
- ☆65Sep 14, 2023Updated 2 years ago
- Template-based protein design with Raygun☆82Apr 12, 2026Updated 2 months ago
- ☆31Dec 12, 2024Updated last year
- P450Diffusion: A tool for designing P450 sequences based on diffusion model☆27Apr 28, 2026Updated last month
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated last year
- LAST: Latent Space Assisted Adaptive Sampling for Protein Trajectories☆13Dec 17, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- ☆42Mar 7, 2026Updated 3 months ago
- User friendly molecular dynamics simulation combining Modeller, OpenMM and Google Colab: A complete guide☆21Updated this week
- This small repository provides functionality for calculating the charge transfer integrals between two molecules.☆35Apr 18, 2023Updated 3 years ago
- Generative method to design novel proteins using a diffusion model☆43Mar 16, 2023Updated 3 years ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆34Aug 23, 2024Updated last year
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆47Jul 11, 2025Updated 11 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆24Dec 4, 2025Updated 6 months ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆36Nov 10, 2025Updated 7 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 7 months ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last month
- ☆11Apr 25, 2021Updated 5 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago