Code supporting the Protein Design Archive (PDA) database publication
☆16May 6, 2026Updated this week
Alternatives and similar repositories for chronowska-stam-wood-2024-protein-design-archive
Users that are interested in chronowska-stam-wood-2024-protein-design-archive are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆16Mar 28, 2025Updated last year
- An open-source project to visualize volumetric image series over multiple temporal axes and render animations of changing morphology.☆15Apr 25, 2026Updated 2 weeks ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Foldy: a web-based platform for interactive protein structure analysis☆29Oct 28, 2025Updated 6 months ago
- ☆17Mar 26, 2024Updated 2 years ago
- design pipeline for protein, nucleic acid, and small molecule☆42Mar 5, 2026Updated 2 months ago
- This package makes it easier for you to draw beautiful ternary diagram without pymatgen.☆21Apr 13, 2026Updated 3 weeks ago
- Identifying peptide-receptor interactions using AlphaFold-Multimer☆28Sep 12, 2023Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- ☆50Apr 22, 2026Updated 2 weeks ago
- ☆16Feb 19, 2026Updated 2 months ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24May 19, 2025Updated 11 months ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17Updated this week
- ☆65Sep 14, 2023Updated 2 years ago
- Template-based protein design with Raygun☆81Apr 12, 2026Updated 3 weeks ago
- ☆31Dec 12, 2024Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated 11 months ago
- P450Diffusion: A tool for designing P450 sequences based on diffusion model☆27Apr 28, 2026Updated last week
- LAST: Latent Space Assisted Adaptive Sampling for Protein Trajectories☆13Dec 17, 2022Updated 3 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- ☆40Mar 7, 2026Updated 2 months ago
- User friendly molecular dynamics simulation combining Modeller, OpenMM and Google Colab: A complete guide☆20Updated this week
- This small repository provides functionality for calculating the charge transfer integrals between two molecules.☆34Apr 18, 2023Updated 3 years ago
- Generative method to design novel proteins using a diffusion model☆43Mar 16, 2023Updated 3 years ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆34Aug 23, 2024Updated last year
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆47Jul 11, 2025Updated 9 months ago
- ☆23Dec 4, 2025Updated 5 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆35Nov 10, 2025Updated 5 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 6 months ago
- Protein representation and design under a single training scheme☆24Apr 27, 2026Updated last week
- ☆11Apr 25, 2021Updated 5 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago