Code supporting the Protein Design Archive (PDA) database publication
☆16Nov 4, 2026Updated last week
Alternatives and similar repositories for chronowska-stam-wood-2024-protein-design-archive
Users that are interested in chronowska-stam-wood-2024-protein-design-archive are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code for The Protein Design Archive web application.☆11Nov 4, 2026Updated last week
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 11 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- Potts model-based protein sequence design☆120Jul 1, 2026Updated 4 months ago
- Supporting information for predicting and engineering post-translational modifcations using Rosetta☆10Feb 13, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Mar 8, 2024Updated 2 years ago
- ☆33Dec 12, 2024Updated last year
- ☆12Feb 17, 2023Updated 3 years ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆49Aug 5, 2025Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- ☆15Mar 28, 2025Updated last year
- Combining transformer and 3DCNN models to achieve co-design of structures and sequences of antibodies in a diffusional manner☆13Mar 17, 2025Updated last year
- The UltraPlexer is a kmer-based tool that allows assigning non-barcoded long-read sequences generated by the Oxford Nanopore Technology t…☆10Aug 16, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆96Jun 1, 2026Updated 5 months ago
- ☆64Sep 14, 2023Updated 3 years ago
- PyO3 bindings to sc-rs for Lawrence-Colman Shape Complementarity on protein interfaces☆13May 30, 2026Updated 5 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆40Nov 25, 2024Updated last year
- An open-source project to visualize volumetric image series over multiple temporal axes and render animations of changing morphology.☆20Apr 25, 2026Updated 6 months ago
- Latents-based conformational control in OpenFold3.☆82May 25, 2026Updated 5 months ago
- design pipeline for protein, nucleic acid, and small molecule☆46Mar 5, 2026Updated 8 months ago
- ☆25Aug 6, 2026Updated 3 months ago
- ☆17Mar 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Feb 6, 2026Updated 9 months ago
- Building a DCA Frustratometer from scratch. Ultimately we aim to compare frustrated sites according to the DCA and AWSEM Frustratometers.☆17Jan 8, 2026Updated 10 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆144Jan 28, 2026Updated 9 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆25Sep 18, 2025Updated last year
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- ☆21Nov 21, 2025Updated 11 months ago
- Foldy: a web-based platform for interactive protein structure analysis☆29Oct 25, 2026Updated 2 weeks ago
- Biomolecular co-folding, binder filtering, and nanobody design☆95Jun 28, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 6 months ago
- PyMolAI provides Agentic interface to PyMol workflows, built on top of Open Source version of PyMol.☆165Feb 23, 2026Updated 8 months ago
- Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."☆23Oct 23, 2025Updated last year
- ☆57Apr 22, 2026Updated 6 months ago
- ☆23Jul 4, 2021Updated 5 years ago
- ☆24May 19, 2025Updated last year
- ☆29Oct 7, 2024Updated 2 years ago
Are these results useful?