DSIMB / MEDUSA
A Deep Learning based protein flexibility prediction tool.
☆9Updated 2 years ago
Alternatives and similar repositories for MEDUSA:
Users that are interested in MEDUSA are comparing it to the libraries listed below
- ☆39Updated this week
- ☆32Updated last year
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated last year
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆42Updated 2 years ago
- ☆28Updated last year
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 3 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- Subpocket-based fingerprint for kinase pocket comparison☆32Updated last year
- MMTSB Tool Set☆31Updated 6 months ago
- A Python tool for parsing and analyzing electron density maps data available from the worldwide Protein Data Bank☆12Updated last year
- The code for the QuickVina homepage.☆33Updated 2 years ago
- Protein-Ligand Interaction Fingerprints☆20Updated 4 years ago
- ☆8Updated 6 years ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆23Updated last month
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆34Updated last week
- Some scripts that I keep using over and over.☆18Updated 4 months ago
- protein docking using a density-based descriptor for atoms charge and dynamics☆14Updated 2 years ago
- Dynamics PyMOL Plugin☆42Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 6 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated 9 months ago
- A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"☆37Updated last year
- High-throughput molecular docking with multiple targets and ligands using Vina series engines☆31Updated 4 years ago
- KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.☆29Updated 11 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated last week
- ☆19Updated last year
- Cloud-based Drug Binding Structure Prediction☆37Updated last month
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆26Updated 9 months ago
- Membrane protein builder and parameterizer☆19Updated 8 months ago