Alternatives and similar repositories for UEP:

Users that are interested in UEP are comparing it to the libraries listed below

• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆17Updated last year
• ykurumida / ab-predictor
  test
  ☆14Updated 4 years ago
• JingHuangLab / EViS
  EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity
  ☆13Updated 3 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 4 months ago
• NRGlab / Surfaces
  ☆14Updated 2 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated 7 months ago
• concept-lab / SiteFerret
  Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest
  ☆12Updated 2 years ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆25Updated last week
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 7 months ago
• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆17Updated last year
• volkamerlab / kissim_app
  Kinome-wide structural pocket similarity
  ☆10Updated 2 years ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 8 months ago
• maltesie / bridge2
  GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.
  ☆9Updated 2 years ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 6 years ago
• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated last month
• Furman-Lab / PatchMAN
  ☆26Updated 9 months ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• Hoecker-Lab / protlego
  Automated construction of protein chimeras and their analysis.
  ☆14Updated last year
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆29Updated last year
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆13Updated 2 months ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆23Updated last year
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆26Updated 3 months ago
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated this week
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆17Updated 9 months ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆24Updated 2 weeks ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated last month
• keisuke-yanagisawa / exprorer_msmd
  MSMD (mixed-solvent molecular dynamics) engine and analysis tools
  ☆18Updated last month
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆26Updated 3 years ago