vsbuffalo / makefiles-in-bioinfoView external linksLinks
A talk on Makesfiles in bioinformatics
☆26Jul 18, 2013Updated 12 years ago
Alternatives and similar repositories for makefiles-in-bioinfo
Users that are interested in makefiles-in-bioinfo are comparing it to the libraries listed below
Sorting:
- ☆13Apr 2, 2025Updated 10 months ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- A project to develop the R Shiny applications.☆12May 13, 2019Updated 6 years ago
- Simple R script for plotting ideograms and annotating with bed files.☆12Sep 21, 2015Updated 10 years ago
- My blog.☆16Aug 8, 2025Updated 6 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 6 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Example package that uses shinytest to test application created by a function☆16Mar 29, 2018Updated 7 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 9 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Nov 20, 2018Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 5 years ago
- R package: dirdf - Extracts Metadata from Directory and File Names☆56Mar 25, 2021Updated 4 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 11 years ago
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated last year
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- Site Identification from Short Read Sequences.☆24Nov 2, 2021Updated 4 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Oct 1, 2013Updated 12 years ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 6 years ago
- SUSHI: Supporting User for SHell script Integration☆27Feb 6, 2026Updated last week
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Website☆16Aug 30, 2025Updated 5 months ago
- Genomics Research Container Architecture☆48Aug 30, 2019Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 9 years ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 10 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Jul 18, 2017Updated 8 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- R package to create an on-screen keyboard as a custom R Shiny input binding☆26Nov 10, 2020Updated 5 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 6 years ago
- pkgdown template and action to build ropensci docs☆25Jan 27, 2026Updated 2 weeks ago
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 6 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56May 11, 2020Updated 5 years ago