vsbuffalo / makefiles-in-bioinfo
A talk on Makesfiles in bioinformatics
☆26Updated 11 years ago
Alternatives and similar repositories for makefiles-in-bioinfo:
Users that are interested in makefiles-in-bioinfo are comparing it to the libraries listed below
- ☆18Updated 9 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 3 years ago
- ☆19Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 14 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Mapping-free variant caller for short-read Illumina data☆19Updated 4 years ago
- Syllabus and materials for bioinformatics lecture + lab☆21Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Reproducible Phylogenomics☆22Updated 8 years ago
- ☆11Updated last year
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Ebola virus surveillance☆16Updated 8 years ago