ZauggGroup / DeePiCt
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
☆30Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for DeePiCt
- Singularity image for cryo-CARE☆27Updated 2 years ago
- PIP package of cryoCARE☆26Updated 7 months ago
- PyTom software for cryo-tomogram processing☆33Updated 2 months ago
- cryo-EM tomogram simulator☆20Updated this week
- Jupyter-based tool for membrane segmentation manipulation☆9Updated 6 months ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆19Updated 3 weeks ago
- ☆16Updated 7 years ago
- De novo analysis for cryo-electron tomography☆20Updated last week
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆16Updated last year
- automated on-the-fly tilt-series alignment☆9Updated 3 years ago
- ☆43Updated 3 months ago
- GPU accelerated software package for CTF estimation of cryoEM micrographs and cryoET tilt series☆22Updated 4 months ago
- 3D-CTF correction for cryo-electron tomography☆25Updated 6 years ago
- ☆18Updated last year
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆23Updated 2 months ago
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆43Updated 3 weeks ago
- cryolo documentation☆9Updated 6 months ago
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆27Updated 8 months ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆18Updated 2 weeks ago
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆31Updated last month
- ☆30Updated last year
- ☆40Updated this week
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆14Updated this week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆30Updated 3 months ago
- Parallel cryo electron tomography via beam image shift☆29Updated last month
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆16Updated 2 months ago
- Contextual Analysis Tools for cryoET and subtomogram averaging☆19Updated 2 weeks ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆22Updated this week
- ☆10Updated 2 weeks ago
- membrane segmentation in 3D for cryo-ET☆58Updated 2 months ago