ZauggGroup / DeePiCtLinks
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
☆39Updated 2 years ago
Alternatives and similar repositories for DeePiCt
Users that are interested in DeePiCt are comparing it to the libraries listed below
Sorting:
- PIP package of cryoCARE☆45Updated last year
- TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram…☆29Updated 7 months ago
- Singularity image for cryo-CARE☆37Updated 4 years ago
- cryo-EM tomogram simulator☆29Updated this week
- ☆36Updated 2 years ago
- ☆52Updated last year
- De novo analysis for cryo-electron tomography☆24Updated last year
- PyTom software for cryo-tomogram processing☆44Updated last month
- Parallel cryo electron tomography via beam image shift☆40Updated 2 months ago
- membrane segmentation in 3D for cryo-ET☆85Updated 2 months ago
- Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms☆31Updated 6 months ago
- A Modular Platform for Streamlining Automated Cryo-FIB Workflows☆25Updated 11 months ago
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆58Updated 4 months ago
- ☆16Updated 9 years ago
- a bidirectional interface between Dynamo and the Warp-RELION-M pipeline☆19Updated 2 years ago
- automated on-the-fly tilt-series alignment☆11Updated 4 years ago
- 3D-CTF correction for cryo-electron tomography☆28Updated 7 years ago
- A CNN for denoising cryo-EM images☆13Updated 6 years ago
- STAR file I/O in Python☆52Updated 2 months ago
- ☆25Updated last month
- Self-supervised deep learning framework for CryoET analysis☆19Updated last week
- STOPGAP is a MATLAB-based package for subtomogram averaging.☆38Updated 6 months ago
- SerialEM mdoc files as pandas dataframes☆14Updated this week
- a tool for using surfaces to explore volumetric data in napari☆19Updated 9 months ago
- Jupyter-based tool for membrane segmentation manipulation☆10Updated 7 months ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆31Updated this week
- Live processing and real time reconstruction of cryo☆45Updated 2 weeks ago
- GPU-accelerated template matching for cryo-ET☆49Updated last month
- A set of MATLAB wrapper scripts to help with pre-processing of tomography data.☆20Updated 2 weeks ago
- ☆64Updated this week