Alternatives and similar repositories for intro2linux

Users that are interested in intro2linux are comparing it to the libraries listed below

• SvetlanaUP / A-microbiologist-wants-to-compute
  This repo collects the list of learning online resources related to microbiome computational science and tools.
  ☆92Updated 8 months ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆210Updated last week
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆143Updated last week
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆115Updated 2 years ago
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆51Updated last week
• SvetlanaUP / Microbiome-etc-Podcasts
  This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.
  ☆29Updated 7 months ago
• SvetlanaUP / Microbiome-conferences-c
  This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
  ☆62Updated 3 months ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆42Updated 3 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆119Updated last year
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆214Updated last week
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 weeks ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆172Updated 2 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated last month
• nf-core / mag
  Assembly and binning of metagenomes
  ☆241Updated last week
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆160Updated 2 years ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆169Updated 3 months ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆33Updated 2 years ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated 7 months ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆186Updated 5 months ago
• Zymo-Research / figaro
  An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
  ☆89Updated last year
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆63Updated last week
• SegataLab / lefse
  ☆86Updated last year
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆108Updated 2 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆155Updated last week
• CPTR-ReSeqTB / UVP
  Mycobacterium tuberculosis next generation sequence analysis
  ☆24Updated 5 years ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆213Updated last year
• SchlossLab / MiSeq_WetLab_SOP
  ☆60Updated 5 years ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆261Updated 4 years ago