Alternatives and similar repositories for ergatis

Users that are interested in ergatis are comparing it to the libraries listed below

• chiulab / surpi
  SURPI
  ☆86Updated 9 years ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆80Updated 5 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆55Updated 10 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆87Updated 5 years ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆117Updated 5 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated 2 years ago
• SorenKarst / longread_umi
  ☆81Updated 5 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆107Updated 5 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆121Updated 4 months ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆76Updated 3 years ago
• broadinstitute / catch
  A package for designing compact and comprehensive capture probe sets.
  ☆94Updated 2 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆101Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆68Updated 9 months ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• almiheenko / AGB
  Interactive visualization of assembly graphs
  ☆83Updated 3 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆115Updated last week
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆88Updated 7 years ago
• RCollins13 / CNView
  Visualization and annotation of CNVs from population-scale whole-genome sequencing data
  ☆72Updated 8 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆108Updated last week
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆56Updated 5 years ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆58Updated 2 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆94Updated 2 years ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆52Updated 5 years ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆99Updated 4 years ago