ayixon / RaPDTool
Rapid Profiling and Deconvolution Tool for Metagenomes
☆113Updated last year
Alternatives and similar repositories for RaPDTool
Users that are interested in RaPDTool are comparing it to the libraries listed below
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago
- Bioinformatics Tools☆87Updated this week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆76Updated 2 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆119Updated last year
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated 5 months ago
- Using ggtree to build phylogenetic trees☆47Updated 6 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆97Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- Scripts and libraries for Environmental Genomics☆37Updated 3 months ago
- Development version of Easyfig☆93Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- A toolbox for comparative genomics.☆103Updated 3 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆153Updated last year
- ☆60Updated 5 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆45Updated last month
- Reorients assembled microbial sequences☆117Updated last month
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆122Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.☆61Updated last month
- Making whole bacterial genome sequencing data analysis easy☆106Updated 3 weeks ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆66Updated 2 weeks ago
- A user-friendly workflow for phylogenomics☆213Updated this week
- BSR-Based Allele Calling Algorithm☆143Updated last month
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 weeks ago
- Course material for the metagenomics course☆44Updated 3 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated this week
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆44Updated 9 months ago