ayixon / RaPDToolLinks
Rapid Profiling and Deconvolution Tool for Metagenomes
☆114Updated last year
Alternatives and similar repositories for RaPDTool
Users that are interested in RaPDTool are comparing it to the libraries listed below
Sorting:
- A user-friendly workflow for phylogenomics☆223Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆166Updated 3 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆173Updated this week
- BSR-Based Allele Calling Algorithm☆147Updated this week
- Pan-genome wide association studies☆205Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆163Updated 3 months ago
- ☆61Updated 6 years ago
- Making whole bacterial genome sequencing data analysis easy☆115Updated 7 months ago
- ☆151Updated last year
- Bioinformatics Tools☆90Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 9 months ago
- A robust, extensible metagenomics pipeline☆174Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆240Updated 9 months ago
- DAS Tool☆163Updated last year
- "Reads to report" for public health and clinical microbiology☆141Updated last week
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆30Updated 3 months ago
- Convert various sequence formats to FASTA☆140Updated last week
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆129Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated 2 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆94Updated last year
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆172Updated 3 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆208Updated 3 months ago
- This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.☆62Updated last month
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated 4 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated 2 weeks ago