ayixon / RaPDToolLinks
Rapid Profiling and Deconvolution Tool for Metagenomes
☆114Updated last year
Alternatives and similar repositories for RaPDTool
Users that are interested in RaPDTool are comparing it to the libraries listed below
Sorting:
- A user-friendly workflow for phylogenomics☆225Updated last week
- BSR-Based Allele Calling Algorithm☆148Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Updated 5 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆177Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆166Updated 9 months ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- DAS Tool☆169Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Updated last week
- A robust, extensible metagenomics pipeline☆174Updated this week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated last week
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆173Updated 2 months ago
- ☆61Updated 6 years ago
- Pan-genome wide association studies☆207Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆96Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆248Updated 10 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆92Updated 7 months ago
- snipit: summarise snps relative to your reference sequence☆166Updated 3 weeks ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Updated 2 years ago
- ☆155Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 3 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆232Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆179Updated 2 weeks ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Updated 2 years ago