My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other hierarchical methods)
☆54Jul 2, 2023Updated 3 years ago
Alternatives and similar repositories for flash-genomics-model
Users that are interested in flash-genomics-model are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆39Aug 3, 2021Updated 5 years ago
- Some personal experiments around routing tokens to different autoregressive attention, akin to mixture-of-experts☆121Oct 17, 2024Updated last year
- Standalone Product Key Memory module in Pytorch - for augmenting Transformer models☆88Nov 1, 2025Updated 10 months ago
- Implementation of an Attention layer where each head can attend to more than just one token, using coordinate descent to pick topk☆47Jul 16, 2023Updated 3 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of a holodeck, written in Pytorch☆19Nov 1, 2023Updated 2 years ago
- Implementation of GateLoop Transformer in Pytorch and Jax☆93Jun 18, 2024Updated 2 years ago
- Just some miscellaneous utility functions / decorators / modules related to Pytorch and Accelerate to help speed up implementation of new…☆126Jul 26, 2024Updated 2 years ago
- Experiments around a simple idea for inducing multiple hierarchical predictive model within a GPT☆228Mar 25, 2026Updated 5 months ago
- A simple Transformer where the softmax has been replaced with normalization☆20Sep 11, 2020Updated 5 years ago
- Yet another random morning idea to be quickly tried and architecture shared if it works; to allow the transformer to pause for any amount…☆53Oct 22, 2023Updated 2 years ago
- Implementation of Memory-Compressed Attention, from the paper "Generating Wikipedia By Summarizing Long Sequences"☆71Apr 10, 2023Updated 3 years ago
- Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein…☆290Dec 17, 2024Updated last year
- Implementation of the Kalman Filtering Attention proposed in "Kalman Filtering Attention for User Behavior Modeling in CTR Prediction"☆61Oct 22, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CUDA implementation of autoregressive linear attention, with all the latest research findings☆46May 23, 2023Updated 3 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆76Jun 8, 2021Updated 5 years ago
- Implementation of Discrete Key / Value Bottleneck, in Pytorch☆89Jul 9, 2023Updated 3 years ago
- Exploration into the proposed "Self Reasoning Tokens" by Felipe Bonetto☆58May 17, 2024Updated 2 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆806Apr 22, 2025Updated last year
- GPT lanuage model for dna sequence☆17Nov 20, 2024Updated last year
- ☆13Oct 19, 2023Updated 2 years ago
- A Pytorch implementation of Attention on Attention module (both self and guided variants), for Visual Question Answering☆43Nov 8, 2020Updated 5 years ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆52Nov 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Exploring an idea where one forgets about efficiency and carries out attention across each edge of the nodes (tokens)☆56Mar 25, 2025Updated last year
- Pytorch implementation of a simple way to enable (Stochastic) Frame Averaging for any network☆52Jul 26, 2024Updated 2 years ago
- coming soon☆28May 9, 2023Updated 3 years ago
- Explorations into the proposal from the paper "Grokfast, Accelerated Grokking by Amplifying Slow Gradients"☆104Dec 22, 2024Updated last year
- Toy genetic algorithm in Pytorch☆58Apr 21, 2026Updated 4 months ago
- Implementation of 🌻 Mirasol, SOTA Multimodal Autoregressive model out of Google Deepmind, in Pytorch☆92Dec 22, 2023Updated 2 years ago
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 3 years ago
- Implementation of MEGABYTE, Predicting Million-byte Sequences with Multiscale Transformers, in Pytorch☆655Dec 27, 2024Updated last year
- An implementation of local windowed attention for language modeling☆504Jul 16, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Implementation of Recurrent Memory Transformer, Neurips 2022 paper, in Pytorch☆425Jan 6, 2025Updated last year
- ☆16Jan 7, 2025Updated last year
- Explorations into whether a transformer with RL can direct a genetic algorithm to converge faster☆72Jun 2, 2026Updated 3 months ago
- Explorations into adversarial losses on top of autoregressive loss for language modeling☆41Dec 21, 2025Updated 8 months ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Dec 27, 2022Updated 3 years ago
- Implementation of fused cosine similarity attention in the same style as Flash Attention☆220Aug 24, 2026Updated 2 weeks ago
- An implementation of (Induced) Set Attention Block, from the Set Transformers paper☆72Jun 8, 2026Updated 3 months ago