Alternatives and similar repositories for dmaps

Users that are interested in dmaps are comparing it to the libraries listed below

• choderalab / ensembler
  Automated omics-scale protein modeling and simulation setup.
  ☆53Updated 3 years ago
• ur-whitelab / maxent
  MaxEnt code for fitting simulation outcomes/statistical models to observations
  ☆16Updated 3 years ago
• aqlaboratory / pnerf
  ☆36Updated 5 years ago
• leojklarner / Q-SAVI
  Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions
  ☆24Updated 2 years ago
• mdtraj / nma
  Normal Mode Analysis for Macromolecules
  ☆18Updated 8 years ago
• emmijokinen / mgpfusion
  mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…
  ☆15Updated 7 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated 2 years ago
• lamoureux-lab / 3DCNN_MQA
  Deep convolutional networks for fold recognition
  ☆22Updated 5 years ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• awlong / DiffusionMap
  C++ implementation of the Diffusion Map, with Python bindings
  ☆10Updated 7 years ago
• brianhie / uncertainty
  Learning with uncertainty for biological discovery and design
  ☆34Updated 2 years ago
• PeptoneLtd / nerfax
  An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
  ☆17Updated last year
• Svvord / visar
  ☆13Updated 5 years ago
• sokrypton / seqmodels
  ☆31Updated 4 years ago
• encore-similarity / encore
  An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…
  ☆15Updated 6 years ago
• choderalab / gimlet
  Graph Inference on MoLEcular Topology
  ☆26Updated 2 years ago
• openvax / pepnet
  Neural networks for amino acid sequences
  ☆20Updated 7 years ago
• largelymfs / DeepFold
  Learning structural motif representations for efficient protein structure search
  ☆19Updated 8 years ago
• Degiacomi-Lab / biobox
  a toolbox for the manipulation, modelling and analysis of molecular structures
  ☆27Updated 8 months ago
• UCL / cathpy
  Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)
  ☆14Updated 9 months ago
• lightdock / lightdock-python2.7
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆24Updated 5 years ago
• matteofigliuzzi / bmDCA
  ☆18Updated 7 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• LBM-EPFL / CLoNe
  Clustering tool for biomolecular structural ensembles and data in general.
  ☆10Updated 4 years ago
• sbliven / rcsbsearch
  Python interface for the RCSB search API.
  ☆20Updated last year
• jchodera / statmech-for-biochemists
  A primer on statistical mechanics for biochemists
  ☆46Updated 2 years ago
• Pranavkhade / PACKMAN
  Python package built around protein structure and dynamics. OpenBabel-inspired objects.
  ☆36Updated last month
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 3 years ago
• rjdkmr / do_x3dna
  To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
  ☆26Updated 3 months ago
• moldyn / FastPCA
  Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.
  ☆10Updated 3 years ago