Alternatives and similar repositories for outbreaks:

Users that are interested in outbreaks are comparing it to the libraries listed below

• MJomaba / flu-evidence-synthesis
  Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques
  ☆20Updated 2 years ago
• reconhub / projections
  Projections of future incidence
  ☆14Updated last month
• ryanpeek / markdown_cv
  A nice Rmarkdown template for a CV, courtesy of svmiller's template (http://svmiller.com/blog/2016/03/svm-r-markdown-cv/)
  ☆53Updated 4 years ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 4 months ago
• hrbrmstr / cdcfluview
  R package to Retrieve U.S. Flu Season Data from the CDC FluView Portal (WHO & ILINet)
  ☆57Updated last year
• reconhub / epicontacts
  Handling, Visualisation and Analysis of Epidemiological Contacts
  ☆15Updated last week
• reconhub / earlyR
  Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.
  ☆9Updated 4 years ago
• ProjectMOSAIC / ggformula
  Provides a formula interface to 'ggplot2' graphics.
  ☆38Updated 8 months ago
• fsolt / dotwhisker
  Dot-and-Whisker Plots of Regression Results
  ☆60Updated 4 months ago
• emilyriederer / conf-speaker-experience
  A list of "good practices" for creating a good environment for conference speakers. Based on my own experience as a speaker but prepared …
  ☆30Updated 5 years ago
• m-clark / sem
  <- Structural Equation Modeling from a broader context.
  ☆31Updated 6 years ago
• grimbough / msmbstyle
  Tufte inspired bookdown template
  ☆59Updated 2 years ago
• reconhub / incidence
  ☣☣ Compute and visualise incidence
  ☆58Updated 5 months ago
• appliedepi / epirhandbook
  An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…
  ☆42Updated 5 months ago
• coatless-rpkg / assignr
  Tools for Educators Writing Assignments in RMarkdown
  ☆42Updated last year
• como-ph / oxcovid19
  An R API to the Oxford COVID-19 Database
  ☆12Updated 3 years ago
• kingaa / sbied
  Simulation-based Inference for Epidemiological Dynamics
  ☆25Updated 9 months ago
• rudeboybert / SpatialEpi
  R Package of methods and data for spatial epidemiology
  ☆31Updated last year
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆17Updated 3 years ago
• yihui / testit
  A simple package for testing R packages
  ☆58Updated 7 months ago
• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆56Updated 2 years ago
• CBDRH / covidrecon
  R tools for monitoring effectiveness of COVID-19 control efforts
  ☆12Updated 4 years ago
• sckott / ftp
  ftp for R
  ☆28Updated 4 years ago
• pzhaonet / rosr
  Create academic R markdown projects for open science and reproducible research
  ☆26Updated 4 years ago
• reconverse / incidence2
  Compute and visualise incidence (reworking of the original incidence package)
  ☆17Updated 2 months ago
• R4EPI / sitrep
  Report templates and helper functions for applied epidemiology
  ☆41Updated 2 months ago
• reconhub / linelist
  An R package to import, clean, and store case data
  ☆25Updated 2 years ago
• goldingn / covid19_australia_interventions
  Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia
  ☆13Updated last year
• PredictiveEcology / reproducible
  A set of tools for R that enhance reproducibility beyond package management
  ☆41Updated this week
• rstudio-education / communicate-rmd-workshop
  Communicating with R Markdown workshop
  ☆18Updated 5 years ago