JIP Pipeline System
☆19Feb 5, 2018Updated 8 years ago
Alternatives and similar repositories for pyjip
Users that are interested in pyjip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- CloudFlare Dynamic DNS Client☆16Jun 29, 2024Updated last year
- Rough and dirty web Mud game - using SockJS and Django☆21Nov 3, 2011Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 8 years ago
- An OS X menubar app to conveniently manage Emacs in server/client mode and offers OS X integrations such as Drag'n Drop and "Open with ..…☆10Jun 14, 2017Updated 8 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Interactive TooManyCells Trees☆14Dec 6, 2024Updated last year
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/☆18Nov 15, 2012Updated 13 years ago
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated last year
- provides a way to integrate a sphinx based documentation into your app.☆33Aug 5, 2019Updated 6 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 6 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 10 months ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- Empirical Bayes methods for single cell data☆17Oct 12, 2020Updated 5 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SURPI☆86May 10, 2016Updated 10 years ago
- Simple test suite enabling Django app testing via $ python setup.py test.☆43May 9, 2018Updated 8 years ago
- A python typesetting application with support for emoji, graphs, charts, tables, and more.☆17May 2, 2017Updated 9 years ago
- Java Library to include text messages into stack traces☆11Oct 25, 2019Updated 6 years ago
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated 8 months ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆19Jan 13, 2026Updated 4 months ago
- An Example puppetized setup of grahpite, jmxtrans, collectd , logster☆58May 22, 2013Updated 12 years ago
- Reproducing result from the paper☆34May 12, 2021Updated 5 years ago
- simple archlinux installer☆16Jul 4, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq☆16Jun 20, 2022Updated 3 years ago
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15May 1, 2026Updated 3 weeks ago
- cache packages permanently☆16Oct 9, 2025Updated 7 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- Code to go along with Velasco et. al.☆11Jun 5, 2019Updated 6 years ago
- it fetch closed captions from youtube videos if available