thasso / pyjipLinks
JIP Pipeline System
☆19Updated 7 years ago
Alternatives and similar repositories for pyjip
Users that are interested in pyjip are comparing it to the libraries listed below
Sorting:
- A needle plot for mutation data☆26Updated 7 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- ☆9Updated 8 years ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- SevenBridges Python Api bindings☆46Updated 3 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- commandline manipulation of genomic variants and NGS reads☆19Updated 9 months ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 6 months ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆41Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Flexible omics pipeline☆18Updated 3 weeks ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Genomics Research Container Architecture☆48Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- A versatile and efficient RNA-Seq read counting tool☆16Updated 9 years ago