Faster, more accurate and entirely open source method for predicting contacts in proteins
☆12May 21, 2018Updated 8 years ago
Alternatives and similar repositories for PconsC3
Users that are interested in PconsC3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated last year
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆114Nov 8, 2023Updated 2 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- ☆20Jul 16, 2021Updated 4 years ago
- Contact map alignment☆16May 10, 2018Updated 8 years ago
- Contact Prediction ToolKit☆22Mar 13, 2026Updated 3 months ago
- pdbTool: An object-oriented Julia tool to parse PDB files and work with them☆17Jan 24, 2021Updated 5 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆29May 23, 2018Updated 8 years ago
- Pipeline for protein folding using PconsC and Rosetta☆18May 21, 2018Updated 8 years ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆17Jun 9, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 4 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- Gradients for dynamic programming☆17Nov 10, 2023Updated 2 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆29May 12, 2023Updated 3 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated last year
- A Christmas tree protein☆19Dec 27, 2024Updated last year
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- ☆27May 9, 2022Updated 4 years ago
- An open-source library for the analysis of protein interactions.☆35Dec 5, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deciphering protein evolution and fitness landscapes with latent space models☆37Nov 2, 2021Updated 4 years ago
- Variational Bayes for discrete undirected models☆11Aug 7, 2017Updated 8 years ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- An HP 2D Lattice Environment with a Gym-like API for the Protein Folding Problem☆54Dec 8, 2022Updated 3 years ago
- Using Gomacs from IPython notebook☆20Apr 8, 2014Updated 12 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- ☆15Mar 27, 2020Updated 6 years ago
- Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code☆42Dec 11, 2025Updated 6 months ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prediction of protein contact map☆20Feb 2, 2021Updated 5 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- ☆39Aug 31, 2021Updated 4 years ago
- ☆34Sep 19, 2025Updated 9 months ago
- Official implementation of the paper "SAINT"☆17Mar 12, 2022Updated 4 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- ☆11Apr 25, 2021Updated 5 years ago