Draw UpSet plots with Matplotlib
☆377May 2, 2024Updated last year
Alternatives and similar repositories for UpSetPlot
Users that are interested in UpSetPlot are comparing it to the libraries listed below
Sorting:
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆322Jun 4, 2018Updated 7 years ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated last month
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A small library for automatical adjustment of text position in matplotlib plots to minimize overlaps.☆1,646Apr 22, 2025Updated 10 months ago
- UpSet - Visualizing Intersecting Sets☆72Mar 10, 2026Updated last week
- Python bindings to UCSC BigWig and BigBed library☆36Mar 13, 2026Updated last week
- Area-weighted venn-diagrams for Python/matplotlib☆566Feb 25, 2025Updated last year
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Dec 1, 2021Updated 4 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆376Mar 14, 2026Updated last week
- a python package for fast random access to sequences from plain and gzipped FASTA/Q files☆290Jan 16, 2026Updated 2 months ago
- add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different…☆831Jan 8, 2026Updated 2 months ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆42Sep 17, 2021Updated 4 years ago
- Python library to handle Gene Ontology (GO) terms☆882Mar 13, 2026Updated last week
- Genomic interval operations on Pandas DataFrames☆190Mar 2, 2026Updated 2 weeks ago
- supervenn: precise and easy-to-read multiple sets visualization in Python☆366Nov 9, 2024Updated last year
- python Circos☆373Jun 14, 2024Updated last year
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,054Oct 3, 2025Updated 5 months ago
- Engaging visualisations, made easy.☆14Aug 7, 2024Updated last year
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400Aug 13, 2025Updated 7 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆329Mar 16, 2025Updated last year
- Legend made easy for matplotlib☆35Jun 7, 2025Updated 9 months ago
- Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.☆434Dec 4, 2025Updated 3 months ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Jul 4, 2025Updated 8 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Statistical package in Python based on Pandas☆1,884Mar 14, 2026Updated last week
- UpSet intersection visualization utility for Plolty (Python-only)☆13Mar 9, 2023Updated 3 years ago
- GO enrichment with python -- pandas meets networkx☆88Jul 15, 2020Updated 5 years ago
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆740Updated this week
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- A Python package to make publication-ready but customizable coefficient plots.☆138Jul 28, 2024Updated last year
- A declarative interactive genomics visualization library for Python.☆243Nov 24, 2025Updated 3 months ago
- A python extension for quick access to bigWig and bigBed files☆240Jan 14, 2026Updated 2 months ago
- ☆30Aug 1, 2023Updated 2 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆352Dec 9, 2025Updated 3 months ago
- Joyplots in Python with matplotlib & pandas☆603Mar 21, 2024Updated 2 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,108Updated this week
- Comparison of Hi-C Experiments using Structural Similarity.☆28Jul 18, 2023Updated 2 years ago