Alternatives and similar repositories for stochss

Users that are interested in stochss are comparing it to the libraries listed below

• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• sys-bio / simplesbml
  Python package for building SBML models without needing to use libSBML.
  ☆10Updated 4 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆15Updated 2 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 7 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last week
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 9 months ago
• whole-cell-tutors / wholecell
  COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model
  ☆10Updated 9 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 7 months ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last month
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆130Updated last month
• SynBioDex / pySBOL
  SWIG-Python wrappers implementing SBOL 2.2
  ☆25Updated 3 years ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated last month
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• autoprotocol / autoprotocol-python
  Python library for generating Autoprotocol
  ☆124Updated 2 years ago
• SynBioHub / synbiohub
  Web application enabling users and software to browse, upload, and share synthetic biology designs
  ☆79Updated last week
• gjbekker / molmil
  WebGL based molecular viewer
  ☆36Updated 3 weeks ago
• bgruening / docker-ipython-notebook
  IPython running in a docker container. This image can be used to integrate IPython into Galaxy
  ☆17Updated 9 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last week
• pybel / pybel
  🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
  ☆136Updated last year
• globus / globus-jupyter-notebooks
  ☆26Updated 3 months ago
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 10 months ago
• Edinburgh-Genome-Foundry / DnaWeaver
  A route planner for DNA assembly
  ☆36Updated 8 months ago
• wikipathways / pvjs
  JavaScript-based pathway viewer and editor
  ☆35Updated 11 months ago
• sbl-sdsc / mmtf-pyspark
  Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  ☆68Updated 2 years ago
• RuleWorld / rulebender
  Rule-Based Modeling and Simulation Gui
  ☆12Updated 5 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆123Updated this week